R Observatory: Metrics for GOplot version 1.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GOplot

1.0.2Package record

Visualization of Functional Analysis Data

0packages dependsuggested by 2

19.6Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Wencke WalterCRAN page ↗GitHub ↗Issues ↗

Implementation of multilayered visualizations for enhanced graphical representation of functional analysis data. It combines and integrates omics data derived from expression and functional annotation enrichment analyses. Its plotting functions have been developed with an hierarchical structure in mind: starting from a general overview to identify the most enriched categories (modified bar plot, bubble plot) to a more detailed one displaying different types of relevant information for the molecules in a given set of categories (circle plot, chord plot, cluster plot, Venn diagram, heatmap).

Changes in 1.0.2

Add function 'reduce_overlap' to reduce the number of redundant terms and improve readability of plots
Add parameter 'bg.col' to GOBubble() to enable panel background colour of facet plot
Add new plot function GOHeat()
Fix various bugs of draw_table()

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GOplot", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("wencke/wencke.github.io")

Development version from wencke/wencke.github.io. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-goplot

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GOplot

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GOplot

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Wencke Walter <wencke.walter@arcor.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.2

READMEYes · 155 wordsVignettesYes · 1 · dynamicNEWSYes · 33% structured · mentions 1.0.2Citation fileYes · cites a publication

Help pages: 11
Examples that run: 0%10 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 10%
Help pages citing references: 0%

Vignettes (1)

GOplot_0.2

How these are measured

Downloads

19.6K

CRAN downloads in the past year

Rank #3,220 · ~54/day · ~1.6K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.1K30 days

3.6K90 days

19.6K1 year

Compare downloads with other packages →

Also on152 r2u8 autocran

How downloads are counted

Repository

wencke/wencke.github.io ↗Account: wencke

24Stars

7Forks

17Open issues

0Open PRs

0Releases

164Commits

2Commit identities

164 commits · Last activity 2016-12-09 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 4
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2025-06-16 · 222026-07-08 · 24

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/wencke/wencke.github.io on 2026-10-11.

Continuous integration (1)

Travis CI (config file)

Docs source (1)

GitHub Pages site last deployed 2016-12-09

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing GOplot adds 19 packages (7 with compiled code, 14 MB of source tarballs). Heaviest: ggplot2 6.0 MB, isoband 1.5 MB, farver 1.2 MB.

Depends (5)

R >= 3.2.3ggplot2 ggdendro gridExtra (>= 2.0.0)RColorBrewer

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 2

Suggests, most downloaded first

genekitr omicsTools

How these are counted

Code & Tests

Datasets

People & History

People (2)

Wencke Walter

Author, Maintainer since 1.0 (2015)

Fatima Sanchez-Cabo

Author

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0.2Latest
record
2016-03-30 · current release · diff ↗ ·
added 2 exports
GOHeat, reduce_overlap
1.0.1
record
2015-07-16 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.0
record
2015-01-30
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2015-01-30
Total releases: 3 / 11 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.2.3
Bundled data: 932 KB / 1 file
Download size: 3.4 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("GOplot")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GOplot version 1.0.2 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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