R Observatory: Metrics for FunctanSNP version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

FunctanSNP

0.1.0Package record

Functional Analysis (with Interactions) for Dense SNP Data

0packages depend

2.3Kdownloads / year

–test coverage

0/13flavors OK

Overview

About

Maintained by Rui RenCRAN page ↗

An implementation of revised functional regression models for multiple genetic variation data, such as single nucleotide polymorphism (SNP) data, which provides revised functional linear regression models, partially functional interaction regression analysis with penalty-based techniques and corresponding drawing functions, etc.(Ruzong Fan, Yifan Wang, James L. Mills, Alexander F. Wilson, Joan E. Bailey-Wilson, and Momiao Xiong (2013) doi:10.1002/gepi.21757).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("FunctanSNP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-functansnp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-FunctanSNP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-FunctanSNP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) SNPcvinter.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) SNPcvinter.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) SNPcvinter.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) SNPcvinter.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) SNPcvinter.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SNPcvinter.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SNPcvinter.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SNPcvinter.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SNPcvinter.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SNPcvinter.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SNPcvinter.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SNPcvinter.Rd:62: Lost braces in \itemize; \value
...[truncated]...
ue handles \item{}{} directly
checkRd: (-1) simData1.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simData1.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simData1.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simData1.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simData2.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simData2.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simData2.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simData2.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simData2.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simX.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simX.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

CRAN check page ↗

Slowest check: 3.4 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTE2026-06-09
ERROR12 NOTE, 1 ERROR2026-06-08
NOTE13 NOTE2026-05-02
ERROR11 NOTE, 1 ERROR2026-04-25
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 12
Examples that run: 100%12 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

2.3K

CRAN downloads in the past year

Rank #19,651 · ~6/day · ~195/mo

Releases R versions

Daily download trend is not available in this view yet.

26330 days

66890 days

2.3K1 year

Compare downloads with other packages →

Also on67 r2u1 autocran

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing FunctanSNP adds 90 packages (55 with compiled code, 79 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 3.5.0

Imports (8)

caret glmnet lavaMASSstatsfda funDatagraphics

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (4)

Rui Ren

Author, Maintainer since 0.1.0 (2022)

Kuangnan Fang

Author

Shuangge Ma

Author

Qingzhao Zhang

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.0Latest
record
2022-10-18 · current release
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-10-18
Total releases: 1 / 4 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Download size: 17 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("FunctanSNP")

Format

Ren, R., Fang, K., Ma, S., & Zhang, Q. (2022). FunctanSNP: Functional Analysis (with Interactions) for Dense SNP Data (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.FunctanSNP

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for FunctanSNP version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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