R Observatory: Metrics for FossilSimShiny version 1.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

FossilSimShiny

1.1.2

Shiny Application for 'FossilSim'

0packages depend

6.5Kdownloads / year

0.0%test coverage

11/13checks pass

Overview

About

Maintained by Joelle Barido-SottaniFirst published 2022-05-314 releasesCRAN page ↗

A shiny application based on 'FossilSim'. Used for simulating tree, taxonomic and fossil data under mechanistic models of speciation, preservation and sampling.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("FossilSimShiny", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-fossilsimshiny

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-FossilSimShiny

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-FossilSimShiny

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.14

0.0%

Coverage · measured lines

100%

Documentation · exports

4

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 38 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

6.5K

CRAN downloads in the past year

Rank #6,613 · ~18/day · ~545/mo

Releases R versions

Daily download trend is not available in this view yet.

21430 days

1.3K90 days

6.5K1 year

Compare downloads with other packages →

Also on101 r2u23 autocran

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

shiny shinyjs FossilSim TreeSim

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown spelling

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Joelle Barido-Sottani

Author, Maintainer, Copyright holder

Authors (3)

Joelle Barido-Sottani

Author, Maintainer, Copyright holder

Titouan Chambe

Author

Rachel Warnock

Author, Copyright holder

Copyright holders (2)

Joelle Barido-Sottani

Author, Maintainer, Copyright holder

Rachel Warnock

Author, Copyright holder

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.2Latest
2024-04-29 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1.1
2023-12-18 · diff ↗
1.1.0
2023-11-02 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.0
2022-05-31
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-05-31
Total releases: 4 / 4 yrs
License: GPL (>= 3) OSI
Download size: 1.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Paleontology

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("FossilSimShiny")

Format

Barido-Sottani, J., Chambe, T., & Warnock, R. (2024). FossilSimShiny: Shiny Application for 'FossilSim' (Version 1.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.FossilSimShiny

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for FossilSimShiny version 1.1.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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