R Observatory: Metrics for FluOMatic version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2015-08-20. Its history is shown below.

Reason: check problems were not corrected despite reminders

Details below reflect version 1.0, its last release before removal.

FluOMatic

1.0

Estimation of background-subtracted fluorescence data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Sebastien Joucla1 releasesCRAN page ↗

Simulate and analyse fluorescence data sets obtained from calcium imaging experiments in living cells (such as neurons). The package provide tools to estimate background-subtracted fluorescence transients and build meaningful confidence intervals on these estimations. This covers both the case of homogeneous background fluorescence and that of Regions Of Interest (ROI) displaying background inhomogeneities. Background-subtracted fluorescence transients can be fitted with monoexponential models or estimated pointwise.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/FluOMatic/FluOMatic_1.0.tar.gz"
pkgFile <- "FluOMatic_1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

0

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 60%

Downloads

FluOMatic Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Other (2)

Sebastien Joucla

Contributor

Christophe Pouzat

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 3.3.0 released · 2016-05-03
archivedRemoved from CRAN
2015-08-20
check problems were not corrected despite reminders
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
1.0
2013-03-18
R
R 2.15.0 released · 2012-03-30

Package metadata

Total releases: 1
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 577 KB / 1 file
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("FluOMatic")

Format

Joucla, S., & Pouzat, C. (n.d.). FluOMatic: Estimation of background-subtracted fluorescence data (Version 1.0) [Computer software]. Retrieved August 15, 2026, from https://CRAN.R-project.org/package=FluOMatic

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for FluOMatic version 1.0 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →