FishDiveR

Classify Aquatic Animal Behaviours from Vertical Movement Data

v1.1.0 · Jan 26, 2026 · GPL (>= 3)

Description

Quantitatively analyse depth time-series data from pop-up satellite archival tags (PSATs) through the application of continuous wavelet transformation (CWT) combined with Principal Component Analysis (PCA), and k-means clustering. Import, crop, and plot depth time-depth records (TDRs). Using CWT to detect important signals within the non-stationary data, we create daily wavelet statistics to summarise vertical movements on different wavelet periods and combine with daily and diel depth statistics. Classify depth time-series with unsupervised k-means clustering into 24-hour periods of vertical movement behaviour with distinct patterns of vertical movement. Plot example days from each behaviour cluster, and plot the TDR coloured by cluster. Based on principals of combining CWT with k-means first developed by Sakamoto (2009) <doi:10.1371/journal.pone.0005379> and redeveloped by Beale (2026) <doi:10.21203/rs.3.rs-6907076/v1>.

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CRAN Check Status

13 OK

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	252.3s
r-devel-linux-x86_64-debian-gcc	OK	176.7s
r-devel-linux-x86_64-fedora-clang	OK	401.4s
r-devel-linux-x86_64-fedora-gcc	OK	387.3s
r-devel-windows-x86_64	OK	252s
r-oldrel-macos-arm64	OK	69s
r-oldrel-macos-x86_64	OK	236s
r-oldrel-windows-x86_64	OK	326s
r-patched-linux-x86_64	OK	242.6s
r-release-linux-x86_64	OK
r-release-macos-arm64	OK	64s
r-release-macos-x86_64	OK	265s
r-release-windows-x86_64	OK	257s

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026

ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.9Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026

ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Package required but not available: ‘geometry’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.9Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.9Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    help      1.9Mb

Dependency Network

Version History

1 tracked

new 1.1.0 Mar 10, 2026

R Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Jan 26, 2026. Releases before tracking aren’t shown.