R Observatory: Metrics for FastSegmentation version 0.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

FastSegmentation

0.0.1

Unsupervised Cell Segmentation by Fast Gaussian Processes

0packages depend

482downloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Blythe KingFirst published 2026-06-081 releasesCRAN page ↗

Performs fast Gaussian process-based segmentation of microscopy images using spatial smoothing and data-driven thresholding. Code based on Baracaldo, L., King, B., Yan, H., Lin, Y., Miolane, N., & Gu, M. (2025). "Unsupervised cell segmentation by fast Gaussian processes." arXiv preprint doi:10.48550/arXiv.2505.18902.

Install

R (CRAN)Ubuntu (r2u)

install.packages("FastSegmentation", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-fastsegmentation

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-oldrel-macos-arm64

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

ERROR2026-06-09
6 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

482

CRAN downloads in the past year

Rank #22,282 · ~1/day · ~40/mo

Releases R versions

Daily download trend is not available in this view yet.

16330 days

48290 days

4821 year

Compare downloads with other packages →

Also on14 r2u

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (5)

EBImagestatsmagick pracma RobustGaSP

LinkingTo (0)

none

Suggests (1)

plot3D

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Blythe King

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Package Timeline

1 release. R releases are shown for context.

0.0.1Latest
2026-06-08 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-08
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Download size: 385 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("FastSegmentation")

Format

King, B., Baracaldo, L., Gu, M., & Yan, H. (2026). FastSegmentation: Unsupervised Cell Segmentation by Fast Gaussian Processes (Version 0.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.FastSegmentation

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for FastSegmentation version 0.0.1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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