R Observatory: Metrics for FIT version 0.0.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2025-12-25. Its history is shown below.

Reason: issues were not addressed in time

Details below reflect version 0.0.6, its last release before removal.

FIT

0.0.6

Transcriptomic Dynamics Models in Field Conditions

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Koji Iwayama6 releasesCRAN page ↗

Provides functionality for constructing statistical models of transcriptomic dynamics in field conditions. It further offers the function to predict expression of a gene given the attributes of samples and meteorological data. Nagano, A. J., Sato, Y., Mihara, M., Antonio, B. A., Motoyama, R., Itoh, H., Naganuma, Y., and Izawa, T. (2012). doi:10.1016/j.cell.2012.10.048. Iwayama, K., Aisaka, Y., Kutsuna, N., and Nagano, A. J. (2017). doi:10.1093/bioinformatics/btx049.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/FIT/FIT_0.0.6.tar.gz"
pkgFile <- "FIT_0.0.6.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.0.6) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-fit

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-FIT

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 33%
Documented parameters: 100%
Return-value docs: 94%
References docs: 6%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on389 r2u13 autocran

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2.2

Imports (5)

methodsRcpp XML gglassoMASS

LinkingTo (2)

Rcpp RcppEigen

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Koji Iwayama

Maintainer

Authors (1)

Yuri Aisaka

Author

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-25
issues were not addressed in time
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.0.6
2019-01-07 · diff ↗
0.0.5
2018-05-08 · diff ↗
unarchivedReturned to CRAN
2018-05-08
R
R 3.5.0 released · 2018-04-23
archivedRemoved from CRAN
2017-09-11
it depends on 'gglasso', which was archived
R
R 3.4.0 released · 2017-04-21
0.0.4
2016-11-28 · diff ↗

Show 4 earlier events

0.0.3
2016-11-24 · diff ↗
0.0.2
2016-11-22 · diff ↗
0.0.1
2016-07-27
R
R 3.3.0 released · 2016-05-03

Package metadata

Total releases: 6
License: MPL (>= 2) | file LICENSE
Minimum R: ≥ 3.2.2
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("FIT")

Format

Iwayama, K., & Aisaka, Y. (n.d.). FIT: Transcriptomic Dynamics Models in Field Conditions (Version 0.0.6) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=FIT

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for FIT version 0.0.6 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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