R Observatory: Metrics for EthSEQ version 3.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EthSEQ

3.0.2

Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data

0packages depend

4.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Alessandro RomanelFirst published 2017-04-0310 releasesCRAN page ↗

Reliable and rapid ethnicity annotation from whole exome and targeted sequencing data.

Install

R (CRAN)Ubuntu (r2u)

install.packages("EthSEQ", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ethseq

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 2.7 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

11

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 3 earlier snapshots

NOTE2026-04-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 100%
Return-value docs: 75%
References docs: 0%

Downloads

4.3K

CRAN downloads in the past year

Rank #11,233 · ~12/day · ~358/mo

Releases R versions

Daily download trend is not available in this view yet.

22830 days

88690 days

4.3K1 year

Compare downloads with other packages →

Also on400 r2u

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.15

Imports (11)

graphicsutilsparallelgrDevicesMASSgeometry data.table SNPRelate (>= 1.8.0)gdsfmt plot3D Rcpp

LinkingTo (1)

Rcpp

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Alessandro Romanel

Author, Maintainer

Authors (2)

Alessandro Romanel

Author, Maintainer

Davide Dalfovo

Author · added in 2.1.4

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
3.0.2Latest
2023-03-18 · current release · diff ↗
3.0.1
2023-01-10 · diff ↗
3.0.0
2022-09-14 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.1.4
2021-02-18 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.1.3
2019-11-22 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
2.1.2
2018-03-16 · diff ↗
2.1.1
2017-09-16 · diff ↗

Show 5 earlier events

2.1.0
2017-07-23 · diff ↗
R
R 3.4.0 released · 2017-04-21
2.0.1
2017-04-06 · diff ↗
2.0.0
2017-04-03
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-04-03
Total releases: 10 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.15
Download size: 1.8 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EthSEQ")

Format

Romanel, A., & Dalfovo, D. (2023). EthSEQ: Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data (Version 3.0.2) [Computer software]. https://doi.org/10.32614/CRAN.package.EthSEQ

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EthSEQ version 3.0.2 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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