R Observatory: Metrics for EpiILM version 1.5.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EpiILM

1.5.4Package record

Spatial and Network Based Individual Level Models for Epidemics

0packages depend

4.7Kdownloads / year

35.7%test coverage

13/13flavors OK

Overview

About

Maintained by Waleed AlmutiryCRAN page ↗GitHub ↗

Provides tools for simulating from discrete-time individual level models for infectious disease data analysis. This epidemic model class contains spatial and contact-network based models with two disease types: Susceptible-Infectious (SI) and Susceptible-Infectious-Removed (SIR).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EpiILM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("waleedalmutiry/EpiILM")

Development version from waleedalmutiry/EpiILM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epiilm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EpiILM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EpiILM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 6.9 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.5.4

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 13includes a package overview page
Examples that run: 92%11 run in a plain check · 1 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 86%
Help pages citing references: 54%

Also includes 2 demo scripts (run with demo())

Vignettes (1)

Posterior Predictive Forecasting and Model Assessment PDF

How these are measured

Downloads

4.7K

CRAN downloads in the past year

Rank #8,232 · ~13/day · ~390/mo

Releases R versions

Daily download trend is not available in this view yet.

50530 days

1.1K90 days

4.7K1 year

Compare downloads with other packages →

Also on376 r2u3 autocran110 c2d4u

How downloads are counted

Repository

waleedalmutiry/epiilm ↗Account: waleedalmutiry

6Stars

2Forks

0Open issues

0Open PRs

0Releases

36Commits

4Commit identities

36 commits · Last activity 2020-09-30 · The default branch showed an older version (1.5.2) than CRAN on 2026-10-21

Responsiveness

not measured

Stars over time

2023-05-25 · 62026-07-07 · 6

How these are measured

PracticesBeta

Checks run against github.com/waleedalmutiry/epiilm on 2026-10-21.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing EpiILM adds 6 packages (3 with compiled code, 5.2 MB of source tarballs). Heaviest: LaplacesDemon 2.0 MB, Rcpp 1.8 MB, RcppArmadillo 1.0 MB.

Depends (7)

coda adaptMCMC LaplacesDemongraphicsstatsutilsR (>= 4.5.0)

Imports (1)

methods

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Waleed Almutiry

Author, Maintainer since 1.5.1 (2020) · added in 1.5

Rob Deardon

Author, Thesis advisor · added in 1.1

Vineetha Warriyar K. V.

Author

Previously maintained by Vineetha Warriyar. K. V. (1.0 to 1.5).

Listed in earlier versions (2)

Vineetha Warriyar. K. V.

no longer listed · 1.0 to 1.5.2

V.

no longer listed · 1.5.3 to 1.5.4

Releases (12)

Pick two releases to compare their code metrics.

1.5.4Latest
record
2026-09-28 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
unarchivedReturned to CRAN
2025-09-26
1.5.3
record
2025-09-26 · diff ↗
archivedRemoved from CRAN
2025-06-13
issues were not corrected despite reminders
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.5.2
record
2020-09-30 · diff ↗
1.5.1
record
2020-06-29 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.5
record
2020-03-12 · diff ↗ ·
removed 2 exports
epicurve, epispatial

added 2 exports
as.epidata, pred.epi
unarchivedReturned to CRAN
2020-01-21
archivedRemoved from CRAN
2020-01-16
check issues were not corrected in time Differences from check output, platform-dependent

Show 11 earlier eventsHide 11 earlier events

R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.4.2
record
2018-03-09 · diff ↗
1.4.1
record
2018-02-18 · diff ↗
1.4
record
2018-02-03 · diff ↗
1.3
record
2017-12-07 · diff ↗
1.2
record
2017-04-22 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.1
record
2017-04-17 · diff ↗
1.0
record
2017-04-14
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-04-14
Total releases: 12 / 9 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.5.0
Bundled data: 1.3 KB / 1 file
Download size: 553 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EpiILM")

Format

Almutiry, W., Deardon, R., & V., V. W. K. (2026). EpiILM: Spatial and Network Based Individual Level Models for Epidemics (Version 1.5.4) [Computer software]. https://doi.org/10.32614/CRAN.package.EpiILM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EpiILM version 1.5.4 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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