R Observatory: Metrics for EnrichIntersect version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EnrichIntersect

1.0

Enrichment Analysis and Intersecting Sankey Diagram

0packages depend

3.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Zhi ZhaoFirst published 2022-07-218 releasesCRAN page ↗GitHub ↗

A flexible tool for enrichment analysis based on user-defined sets. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al., 2022 doi:10.1016/j.isci.2022.104767) or similar methods.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EnrichIntersect", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ocbe-uio/EnrichIntersect")

Development version from ocbe-uio/EnrichIntersect. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-enrichintersect

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EnrichIntersect

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EnrichIntersect

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.6 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 94%
Return-value docs: 100%
References docs: 40%

Downloads

3.3K

CRAN downloads in the past year

Rank #7,506 · ~9/day · ~275/mo

Releases R versions

Daily download trend is not available in this view yet.

27630 days

1.2K90 days

3.3K1 year

Compare downloads with other packages →

Also on168 r2u19 autocran

Repository

GitHub ↗ ocbe-uio/enrichintersect

5Stars

3Forks

0Open issues

0Open PRs

5Releases

25Commits

2Contributors

25 commits · Last activity 2026-06-05 · 0% stars, 30d

Stars over time

2023-04-21 · 42026-07-07 · 5

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/ocbe-uio/enrichintersect on 2026-08-16.

Continuous integration (1)

GitHub Actions

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (10)

Rcpp ggplot2 dplyr networkD3 jsonlite htmlwidgets webshot2statsmethodsgrDevices

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Zhi Zhao

Author, Maintainer

Authors (2)

Zhi Zhao

Author, Maintainer

Manuela Zucknick

Author

Contributors (1)

Tero Aittokallio

Contributor

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

1.0Latest
2026-05-30 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.7
2024-03-14 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.6
2023-02-26 · diff ↗
0.5
2023-01-29 · diff ↗
0.4
2022-09-23 · diff ↗
0.3
2022-09-14 · diff ↗
0.2
2022-08-10 · diff ↗
0.1
2022-07-21
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-07-21
Total releases: 8 / 4 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0
Bundled data: 7.9 KB / 3 files
Download size: 223 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EnrichIntersect")

Format

Zhao, Z., Aittokallio, T., & Zucknick, M. (2026). EnrichIntersect: Enrichment Analysis and Intersecting Sankey Diagram (Version 1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.EnrichIntersect

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EnrichIntersect version 1.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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