R Observatory: Metrics for EnrichIntersect version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EnrichIntersect

1.0Package record

Enrichment Analysis and Intersecting Sankey Diagram

0packages depend

3.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Zhi ZhaoCRAN page ↗GitHub ↗Issues ↗

A flexible tool for enrichment analysis based on user-defined sets. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al., 2022 doi:10.1016/j.isci.2022.104767) or similar methods.

Changes in 1.0

Added Rcpp code to speedup function enrichment()

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EnrichIntersect", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ocbe-uio/EnrichIntersect")

Development version from ocbe-uio/EnrichIntersect. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-enrichintersect

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EnrichIntersect

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EnrichIntersect

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.8 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0

READMENoVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 1.0Citation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 5 (1 internal)includes a package overview page
Examples that run: 100%3 run in a plain check
Exported functions with examples: 50%
Documented parameters: 94%
Return-value docs: 100%
Help pages citing references: 40%

Vignettes (1)

EnrichIntersect HTML

How these are measured

Downloads

3.8K

CRAN downloads in the past year

Rank #7,083 · ~11/day · ~320/mo

Releases R versions

Daily download trend is not available in this view yet.

40830 days

1.2K90 days

3.8K1 year

Compare downloads with other packages →

Also on147 r2u5 autocran

How downloads are counted

Repository

ocbe-uio/enrichintersect ↗Organization: ocbe-uio

5Stars

3Forks

0Open issues

0Open PRs

5Releases

25Commits

2Commit identities

25 commits · Last activity 2026-06-05 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 360
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2023-04-21 · 42026-07-07 · 5

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/ocbe-uio/enrichintersect on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux and macOS, and on R-devel

Governance and community (1)

Contributing guide (inherited from ocbe-uio)

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing EnrichIntersect adds 65 packages (34 with compiled code, 60 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (1)

R >= 4.0

Imports (10)

Rcpp ggplot2 dplyr networkD3 jsonlite htmlwidgets webshot2statsmethodsgrDevices

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Zhi Zhao

Author, Maintainer since 0.1 (2022)

Manuela Zucknick

Author

Tero Aittokallio

Contributor

Releases (8)

Pick two releases to compare their code metrics.

1.0Latest
record
2026-05-30 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.7
record
2024-03-14 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.6
record
2023-02-26 · diff ↗
0.5
record
2023-01-29 · diff ↗
0.4
record
2022-09-23 · diff ↗
0.3
record
2022-09-14 · diff ↗
0.2
record
2022-08-10 · diff ↗
0.1
record
2022-07-21
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-07-21
Total releases: 8 / 4 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0
Bundled data: 7.9 KB / 3 files
Download size: 223 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("EnrichIntersect")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioadv/vbac073.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EnrichIntersect version 1.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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