This package was removed from CRAN on 2021-03-15. Its history is shown below.

Reason: check problems were not corrected in time. Recurrent intermittent check failures, use of progress bars in batch use

Details below reflect version 0.1.0, its last release before removal.

EcoSimR

0.1.0

Null Model Analysis for Ecological Data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Edmund Hart1 releasesCRAN page ↗

Given a site by species interaction matrix, users can make inferences about species interactions by performance hypothesis comparing test statistics against a null distribution. The current package provides algorithms and metrics for niche-overlap, body size ratios and species co-occurrence. Users can also integrate their own algorithms and metrics within these frameworks or completely novel null models. Detailed explanations about the underlying assumptions of null model analysis in ecology can be found at http://ecosimr.org.

Install

R (source archive)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/EcoSimR/EcoSimR_0.1.0.tar.gz"
pkgFile <- "EcoSimR_0.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EcoSimR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.21

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 83%
Documented parameters: 68%
Return-value docs: 81%
References docs: 67%

Downloads

EcoSimR Releases R versions

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Also on31 autocran

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (1)

MASS

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

testthat knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 2,761 (50%)Rd 2,038 (37%)Vignettes 674 (12%)

Code characteristics

Object systems

S38

Cyclomatic complexity: 1.0 median / 12 max
Test cases: 44 / 0.21 per code line

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

50 42 exported

Complexity

2 avg / 12 max

Call network

50 nodes / 5 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 3

Name	Class	Rows × Cols	Also ships in
dataMacWarb	data.frame	5 × 17	–
dataRodents	data.frame	6 × 2	–
dataWiFinches	data.frame	17 × 20	–

People & History

People (3)

Maintainer (1)

Edmund Hart

Author, Maintainer

Authors (3)

Edmund Hart

Author, Maintainer

Nick Gotelli

Author

Aaron Ellison

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-03-15
check problems were not corrected in time Recurrent intermittent check failures, use of progress bars in batch use
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
0.1.0
2015-04-02
R
R 3.1.0 released · 2014-04-10

Package metadata

Total releases: 1
License: MIT + file LICENSE OSI
Bundled data: 1.2 KB / 1 file
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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