R Observatory: Metrics for EcoCleanR version 1.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EcoCleanR

1.0.3

Enhancing Data Quality of Biogeographic Ranges with Application for Marine Invertebrates

0packages depend

1.9Kdownloads / year

60.7%test coverage

13/13checks pass

Overview

About

Maintained by Priyanka SoniFirst published 2025-11-193 releasesCRAN page ↗GitHub ↗

Provides step-by-step automation for integrating biodiversity data from multiple online aggregators, merging and cleaning datasets while addressing challenges such as taxonomic inconsistencies, georeferencing issues, and spatial or environmental outliers. Includes functions to extract environmental data and to define the biogeographic ranges in which species are most likely to occur. For methodological details see the associated publication.<doi: 10.1002/ecog.08203>.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("EcoCleanR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("sonipri/EcoCleanR")

Development version from sonipri/EcoCleanR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ecocleanr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EcoCleanR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 8.3 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.28

60.7%

Coverage · measured lines

100%

Documentation · exports

12

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-14
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

ERROR2026-05-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-26
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-19
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 432 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 64%
Documented parameters: 88%
Return-value docs: 100%
References docs: 0%

Downloads

1.9K

CRAN downloads in the past year

Rank #21,023 · ~5/day · ~161/mo

Releases R versions

Daily download trend is not available in this view yet.

14030 days

52590 days

1.9K1 year

Compare downloads with other packages →

Also on78 r2u

Repository

GitHub ↗ sonipri/ecocleanr

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-02-13

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/sonipri/ecocleanr on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (12)

dplyr geodata geosphere ggplot2 mregions2 patchwork rlang sdmpredictors sf worrms terra tidyr

LinkingTo (0)

none

Suggests (6)

knitr rgbif robis ridigbio rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Priyanka Soni

Author, Maintainer

Authors (1)

Priyanka Soni

Author, Maintainer

Contributors (3)

Vijay Barve

Contributor

David Bottjer

Contributor

Austin Hendy

Contributor

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.3Latest
2026-02-13 · current release · diff ↗
1.0.2
2026-02-11 · diff ↗
unarchivedReturned to CRAN
2026-02-11
archivedRemoved from CRAN
2026-02-05
policy violation On Internet access
1.0.1
2025-11-19
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-11-19
Total releases: 3 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5
Bundled data: 137 KB / 6 files
Download size: 346 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EcoCleanR")

Format

Soni, P., Barve, V., Bottjer, D., & Hendy, A. (2026). EcoCleanR: Enhancing Data Quality of Biogeographic Ranges with Application for Marine Invertebrates (Version 1.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.EcoCleanR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EcoCleanR version 1.0.3 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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