R Observatory: Metrics for EcoCleanR version 1.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EcoCleanR

1.0.3Package record

Enhancing Data Quality of Biogeographic Ranges with Application for Marine Invertebrates

0packages depend

2.5Kdownloads / year

60.7%test coverage

13/13flavors OK

Overview

About

Maintained by Priyanka SoniCRAN page ↗GitHub ↗Website ↗Issues ↗

Provides step-by-step automation for integrating biodiversity data from multiple online aggregators, merging and cleaning datasets while addressing challenges such as taxonomic inconsistencies, georeferencing issues, and spatial or environmental outliers. Includes functions to extract environmental data and to define the biogeographic ranges in which species are most likely to occur. For methodological details see the associated publication.<doi: 10.1002/ecog.08203>.

Changes in 1.0.3

Fixed Title in DESCRIPTION.
Remove dependency on taxize package

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("EcoCleanR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("sonipri/EcoCleanR")

Development version from sonipri/EcoCleanR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ecocleanr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EcoCleanR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 8.2 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-09-17
ERROR12 OK, 1 ERROR2026-09-10
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 6 earlier changesHide 6 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-14
ERROR12 OK, 1 ERROR2026-05-07
OK12 OK2026-04-26
ERROR13 OK, 1 ERROR2026-04-19
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.3

READMEYes · 432 wordsVignettesYes · 2 · staticNEWSYes · 100% structured · mentions 1.0.3Citation fileYes · cites a publicationWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages: 31
Examples that run: 64%16 run in a plain check · 9 never run
Exported functions with examples: 100%
Documented parameters: 88%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (2)

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #17,890 · ~7/day · ~212/mo

Releases R versions

Daily download trend is not available in this view yet.

25630 days

72090 days

2.5K1 year

Compare downloads with other packages →

Also on84 r2u

How downloads are counted

Repository

sonipri/ecocleanr ↗Account: sonipri

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-02-13

Responsiveness

not measured

How these are measured

PracticesBeta

9 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/sonipri/ecocleanr on 2026-10-21.

Continuous integration (1)

GitHub Actions

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-02-13 · The repository has a site deploy workflow

pkgdown site last built 2026-02-13

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing EcoCleanR adds 102 packages (57 with compiled code, 76 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, ggplot2 6.0 MB.

Depends (1)

R >= 3.5

Imports (12)

dplyr geodata geosphere ggplot2 mregions2 patchwork rlang sdmpredictors sf worrms terra tidyr

LinkingTo (0)

none

Suggests (6)

knitr rgbif robis ridigbio rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Priyanka Soni

Author, Maintainer since 1.0.1 (2025)

Vijay Barve

Contributor

Code development feedback and advising

David Bottjer

Contributor

Manuscript mentoring and advising

Austin Hendy

Contributor

Manuscript mentoring and advising

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0.3Latest
record
2026-02-13 · current release · diff ↗ ·
added 1 export
ec_rm_duplicate_occurid
unarchivedReturned to CRAN
2026-02-11
1.0.2
record
2026-02-11 · diff ↗
archivedRemoved from CRAN
2026-02-05
policy violation On Internet access
1.0.1
record
2025-11-19
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-11-19
Total releases: 3 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5
Bundled data: 137 KB / 6 files
Download size: 346 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("EcoCleanR")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1002/ecog.08203.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EcoCleanR version 1.0.3 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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