R Observatory: Metrics for EMA version 1.4.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2021-04-03. Its history is shown below.

Reason: depends on archived package 'heatmap.plus'

Details below reflect version 1.4.7, its last release before removal.

EMA

1.4.7

Easy Microarray Data Analysis

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Pierre Gestraud11 releasesCRAN page ↗

We propose both a clear analysis strategy and a selection of tools to investigate microarray gene expression data. The most usual and relevant existing R functions were discussed, validated and gathered in an easy-to-use R package (EMA) devoted to gene expression microarray analysis. These functions were improved for ease of use, enhanced visualisation and better interpretation of results.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/EMA/EMA_1.4.7.tar.gz"
pkgFile <- "EMA_1.4.7.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.4.7) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

14

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 76%
Documented parameters: 99%
Return-value docs: 86%
References docs: 23%

Downloads

EMA Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (14)

siggenes affy multtestsurvivalxtable gcrma heatmap.plus biomaRt GSAMASSFactoMineRclusterAnnotationDbi Biobase

LinkingTo (0)

none

Suggests (8)

hgu133plus2.db lumi GOstats Category vsn GO.db BiocGenerics GSEABase

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (10)

Other (10)

Nicolas Servant

Contributor · added in 1.4.0

Eleonore Gravier

Contributor · added in 1.4.0

Pierre Gestraud

Contributor · added in 1.4.0

Cecile Laurent

Contributor · added in 1.4.0

Caroline Paccard

Contributor · added in 1.4.0

Anne Biton

Contributor · added in 1.4.0

Jonas Mandel

Contributor · added in 1.4.0

Bernard Asselain

Contributor · added in 1.4.0

Show 2 more other

Emmanuel Barillot

Contributor · added in 1.4.0

Philippe Hupe

Contributor · added in 1.4.0

Listed in earlier versions (1)

EMA group

no longer listed · 1.2 to 1.3.2

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-04-03
depends on archived package 'heatmap.plus'
R
R 4.0.0 released · 2020-04-24
1.4.7
2020-02-14 · diff ↗
1.4.6
2019-12-16 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.4.5
2016-09-07 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
1.4.4
2013-07-01 · diff ↗
1.4.3
2013-07-01 · diff ↗
1.4.2
2013-07-01 · diff ↗
1.4.1
2013-07-01 · diff ↗

Show 10 earlier events

1.4.0
2013-04-05 · diff ↗
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
1.3.2
2012-03-01 · diff ↗
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
1.3.1
2010-10-01 · diff ↗
1.2
2010-10-01
R
R 2.11.0 released · 2010-04-22

Package metadata

Total releases: 11
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 1.5 MB / 2 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EMA")

Format

Servant, N., Gravier, E., Gestraud, P., Laurent, C., Paccard, C., Biton, A., Mandel, J., Asselain, B., Barillot, E., & Hupe, P. (n.d.). EMA: Easy Microarray Data Analysis (Version 1.4.7) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=EMA

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EMA version 1.4.7 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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