R Observatory: Metrics for EHR version 0.4-11

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EHR

0.4-11

Electronic Health Record (EHR) Data Processing and Analysis Tool

0packages depend

3.4Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Leena ChoiFirst published 2017-10-2010 releasesCRAN page ↗

Process and analyze electronic health record (EHR) data. The 'EHR' package provides modules to perform diverse medication-related studies using data from EHR databases. Especially, the package includes modules to perform pharmacokinetic/pharmacodynamic (PK/PD) analyses using EHRs, as outlined in Choi, Beck, McNeer, Weeks, Williams, James, Niu, Abou-Khalil, Birdwell, Roden, Stein, Bejan, Denny, and Van Driest (2020) doi:10.1002/cpt.1787. Additional modules will be added in future. In addition, this package provides various functions useful to perform Phenome Wide Association Study (PheWAS) to explore associations between drug exposure and phenotypes obtained from EHR data, as outlined in Choi, Carroll, Beck, Mosley, Roden, Denny, and Van Driest (2018) doi:10.1093/bioinformatics/bty306.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EHR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ehr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EHR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EHR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 6.8 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Check history

NOTE2026-06-09
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-25
0 OK · 12 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-30
0 OK · 13 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 97%
Documented parameters: 100%
Return-value docs: 100%
References docs: 4%

Downloads

3.4K

CRAN downloads in the past year

Rank #14,259 · ~9/day · ~281/mo

Releases R versions

Daily download trend is not available in this view yet.

16630 days

73990 days

3.4K1 year

Compare downloads with other packages →

Also on726 r2u24 autocran

Repository

GitHub ↗ choileena/choileena.github.io

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-06-09

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/choileena/choileena.github.io on 2026-08-23.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (6)

statsutilsdata.tablemethodslubridate pkdata

LinkingTo (0)

none

Suggests (7)

glmnet logistf medExtractR knitr rmarkdown ggplot2 markdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (6)

Maintainer (1)

Leena Choi

Author, Maintainer

Authors (6)

Leena Choi

Author, Maintainer

Cole Beck

Author

Nathan James

Author · added in 0.4-0

Elizabeth McNeer

Author · added in 0.3-0

Hannah Weeks

Author · added in 0.3-0

Michael Williams

Author · added in 0.4-0

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.4-11Latest
2022-12-19 · current release · diff ↗
0.4-10
2022-10-11 · diff ↗
0.4-8
2022-06-21 · diff ↗
unarchivedReturned to CRAN
2022-06-21
R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2022-04-07
resubmitted without corrected check error 'coercion to logical' errors
0.4-5
2022-04-06 · diff ↗
unarchivedReturned to CRAN
2022-04-06
archivedRemoved from CRAN
2022-04-04
'coercion to logical' errors were not corrected in time See https://www.stats.ox.ac.uk/pub/bdr/LENGTH1/
0.4-4
2021-10-07 · diff ↗
0.4-1
2021-06-09 · diff ↗
0.4-0
2021-06-05 · diff ↗

Show 10 earlier events

R
R 4.1.0 released · 2021-05-18
0.3-1
2020-10-08 · diff ↗
unarchivedReturned to CRAN
2020-10-08
archivedRemoved from CRAN
2020-09-20
problems were not corrected in time Calls model.frame with 'data = sys.parent()', which has never worked and is now an error
0.3-0
2020-09-12 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.1-3
2017-10-20
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-10-20
Total releases: 10 / 9 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 231 KB / 7 files
Download size: 1.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EHR")

Format

Choi, L., Beck, C., James, N., McNeer, E., Weeks, H., & Williams, M. (2022). EHR: Electronic Health Record (EHR) Data Processing and Analysis Tool (Version 0.4-11) [Computer software]. https://doi.org/10.32614/CRAN.package.EHR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EHR version 0.4-11 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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