R Observatory: Metrics for EGRNi version 0.1.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EGRNi

0.1.6Package record

Ensemble Gene Regulatory Network Inference

0packages depend

2.8Kdownloads / year

0.0%test coverage

13/13flavors OK

Overview

About

Maintained by Chiranjib SarkarCRAN page ↗

Gene regulatory network constructed using combined score obtained from individual network inference method. The combined score measures the significance of edges in the ensemble network. Fisher's weighted method has been implemented to combine the outcomes of different methods based on the probability values. The combined score follows chi-square distribution with 2n degrees of freedom. doi:10.22271/09746315.2020.v16.i3.1358.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EGRNi", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-egrni

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EGRNi

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EGRNi

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.4 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.6

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 12
Examples that run: 100%8 run in a plain check
Exported functions with examples: 67%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 75%

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #17,613 · ~8/day · ~230/mo

Releases R versions

Daily download trend is not available in this view yet.

24230 days

73390 days

2.8K1 year

Compare downloads with other packages →

Also on738 r2u1 autocran

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing EGRNi adds 27 packages (15 with compiled code, 7.3 MB of source tarballs). Heaviest: vctrs 1.0 MB, rlang 766 KB, cli 629 KB.

Depends (1)

R >= 3.5.0

Imports (5)

fdrtool gdataMASSreadrstats

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Chiranjib Sarkar

Author, Maintainer since 0.1.6 (2022), Contributor

Dwijesh Mishra

Author

Rajender Parsad

Author

Dipayan Sarkar

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.6Latest
record
2022-11-18 · current release
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-11-18
Total releases: 1 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 332 KB / 4 files
Download size: 758 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EGRNi")

Format

Sarkar, C., Mishra, D., Parsad, R., & Sarkar, D. (2022). EGRNi: Ensemble Gene Regulatory Network Inference (Version 0.1.6) [Computer software]. https://doi.org/10.32614/CRAN.package.EGRNi

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EGRNi version 0.1.6 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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