R Observatory: Metrics for DigestiveDataSets version 0.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DigestiveDataSets

0.2.0Package record

A Curated Collection of Digestive System and Gastrointestinal Disease Datasets

0packages depend

5.2Kdownloads / year

66.7%test coverage

13/13flavors OK

Overview

About

Maintained by Renzo Caceres RossiCRAN page ↗GitHub ↗Website ↗Issues ↗

Provides an extensive and curated collection of datasets related to the digestive system, stomach, intestines, liver, pancreas, and associated diseases. This package includes clinical trials, observational studies, experimental datasets, cohort data, and case series involving gastrointestinal disorders such as gastritis, ulcers, pancreatitis, liver cirrhosis, colon cancer, colorectal conditions, Helicobacter pylori infection, irritable bowel syndrome, intestinal infections, and post-surgical outcomes. The datasets support educational, clinical, and research applications in gastroenterology, public health, epidemiology, and biomedical sciences. Designed for researchers, clinicians, data scientists, students, and educators interested in digestive diseases, the package facilitates reproducible analysis, modeling, and hypothesis testing using real-world and historical data.

Changes in 0.2.0

Breaking Changes

view_datasets_digestive() was renamed to view_datasets_DigestiveDataSets() to avoid naming conflicts with other packages and improve function identification.

New Features

Enhanced function naming convention for better package namespace management.

---

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DigestiveDataSets", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("lightbluetitan/digestivedatasets")

Development version from lightbluetitan/digestivedatasets. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-digestivedatasets

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DigestiveDataSets

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DigestiveDataSets

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.0

READMEYes · 139 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 0.2.0Citation fileYes · software entry onlyWebsiteYes · pkgdown

Help pages: 27includes a package overview page
Examples that run: 100%1 run in a plain check (under a condition)
Exported functions with examples: 4%
Documented parameters: 0%
Return-value docs: 4%
Help pages citing references: 0%

Vignettes (1)

DigestiveDataSets: A Curated Collection of Digestive System and Gastrointestinal Disease Datasets HTML

How these are measured

Downloads

5.2K

CRAN downloads in the past year

Rank #13,440 · ~14/day · ~430/mo

Releases R versions

Daily download trend is not available in this view yet.

29730 days

86590 days

5.2K1 year

Compare downloads with other packages →

Also on82 r2u7 autocran

How downloads are counted

Repository

lightbluetitan/digestivedatasets ↗Account: lightbluetitan

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-09-06

Responsiveness

not measured

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/lightbluetitan/digestivedatasets on 2026-10-22.

Docs source (2)

pkgdown

GitHub Pages site last deployed 2025-09-06

pkgdown site last built 2025-09-06, before release 0.2.0 (2025-09-07)

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing DigestiveDataSets adds no packages beyond those that come with R.

Depends (1)

R >= 4.1.0

Imports (1)

utils

LinkingTo (0)

none

Suggests (5)

ggplot2 testthat dplyr knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Renzo Caceres Rossi

Author, Maintainer since 0.1.0 (2025)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.2.0Latest
record
2025-09-08 · current release · diff ↗ ·
removed 1 export
view_datasets_digestive

added 1 export
view_datasets_DigestiveDataSets
0.1.0
record
2025-06-03
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-06-03
Total releases: 2 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.0
Bundled data: 268 KB / 25 files
Download size: 483 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("DigestiveDataSets")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DigestiveDataSets version 0.2.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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