R Observatory: Metrics for DataSpaceR version 1.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DataSpaceR

1.0.3Package record

Interface to 'the CAVD DataSpace'

0packages depend

4.1Kdownloads / year

6.3%test coverage

13/13flavors OK

Overview

About

Maintained by Jason TaylorCRAN page ↗GitHub ↗Website ↗Issues ↗

Provides a convenient API interface to access immunological data within 'the CAVD DataSpace'(https://dataspace.cavd.org), a data sharing and discovery tool that facilitates exploration of HIV immunological data from pre-clinical and clinical HIV vaccine studies.

Changes in 1.0.3

Improve DataSpaceMabs and DataSpaceDaash API calls
Bug fixes in DataSpaceDonors object and get method
Improve antibody structure export names and data query

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DataSpaceR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ropensci/DataSpaceR")

Development version from ropensci/DataSpaceR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dataspacer

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DataSpaceR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DataSpaceR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.7 min · r-release-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.3

READMEYes · 186 wordsVignettesYes · 6 · staticNEWSYes · 100% structured · mentions 1.0.3Citation fileNoWebsiteYes · pkgdown

Help pages: 11includes a package overview page
Examples that run: 0%10 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (6)

Introduction to DataSpaceR HTML
Accessing CDS DAASH HTML
Accessing Monoclonal Antibody Data HTML
Accessing Publication Data HTML
Accessing Studies and Groups HTML
Using The Virus Name Mapping Tables HTML

How these are measured

Downloads

4.1K

CRAN downloads in the past year

Rank #6,761 · ~11/day · ~339/mo

Releases R versions

Daily download trend is not available in this view yet.

42130 days

1.3K90 days

4.1K1 year

Compare downloads with other packages →

Also on104 r2u16 autocran

How downloads are counted

Repository

ropensci/dataspacer ↗Organization: ropensci

5Stars

3Forks

4Open issues

1Open PRs

9Releases

353Commits

8Commit identities

cavd-dataspace

353 commits · Last activity 2026-08-27 · 0% stars, 30d · The default branch showed an older version (1.0.2) than CRAN on 2026-10-21

Responsiveness

How these are sampled

PRs merged (all time): 88%
Median days to close, 50 most recently updated closed issues: 142
Median days to close, 50 most recently updated closed PRs: 24

Stars over time

2024-02-09 · 52026-07-07 · 5

How these are measured

PracticesBeta

11 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/ropensci/dataspacer on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (4)

Code of conductContributing guideIssue templatesPR template

Docs source (2)

pkgdown

GitHub Pages site last deployed 2019-08-24

Coverage (1)

Coverage reporting (Codecov)

Show all practicesHide 2 practices

Research and citation (1)

codemeta.json

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Installing DataSpaceR adds 15 packages (12 with compiled code, 11 MB of source tarballs). Heaviest: data.table 5.7 MB, Rcpp 1.8 MB, openssl 1.1 MB.

Depends (1)

R >= 4.3.0

Imports (9)

utilsR6 Rlabkey curl httr assertthat digest jsonlite data.table

LinkingTo (0)

none

Suggests (4)

testthat covr knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (6)

Jason Taylor

Author, Maintainer since 0.7.5 (2021) · added in 0.7.2

Ju Yeong Kim

Author

Helen Miller

Author · added in 0.7.3

CAVD DataSpace

Copyright holder · added in 0.7.5

Sean Hughes

Reviewer

Kellie MacPhee

Reviewer · added in 1.0.0

Previously maintained by Ju Yeong Kim (0.6.3 to 0.7.4).

Releases (11)

Pick two releases to compare their code metrics.

1.0.3Latest
record
2026-10-20 · current release · diff ↗
1.0.2
record
2026-08-26 · diff ↗
1.0.1
record
2026-08-04 · diff ↗
1.0.0
record
2026-06-26 · diff ↗ ·
removed 1 export
makeFilter
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.7.7
record
2025-02-20 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.7.6
record
2022-06-24 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.7.5
record
2021-09-03 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.7.4
record
2020-08-26 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.7.3
record
2020-01-08 · diff ↗

Show 4 earlier eventsHide 4 earlier events

0.7.2
record
2019-08-22 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.6.3
record
2019-04-05
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-04-05
Total releases: 11 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.3.0
Download size: 161 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("DataSpaceR")

Format

Taylor, J., CAVD DataSpace, Hughes, S., Kim, J. Y., MacPhee, K., & Miller, H. (2026). DataSpaceR: Interface to 'the CAVD DataSpace' (Version 1.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.DataSpaceR

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DataSpaceR version 1.0.3 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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