Execute and View Data Quality Checks on OMOP CDM Database
Overview
Assesses data quality in Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) databases. Executes data quality checks and provides an R 'shiny' application to view the results.
Patch fix for Eunomia bug; only impacts testthat tests.
From NEWS.md in the release
Install
Health
ERRORtestsr-release-linux-x86_64
Running ‘testthat.R’ [326s/432s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(DataQualityDashboard)
Loading required package: DatabaseConnector
>
> test_check("DataQualityDashboard")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.5.zip'
Content type 'application/zip' length 7414767 bytes (7.1 MB)
==================================================
downloaded 7.1 MB
attempting to extract and load: /home/hornik/tmp/scratch/RtmpHrW1NM/GiBleed_5.5.zip to: /home/hornik/tmp/scratch/RtmpHrW1NM/GiBleed_5.5.sqlite
Connecting using SQLite driver
Executing SQL took 0.0252 secs
Connecting using SQLite driver
Currently in a tryCatch or withCallingHandlers block, so unable to add global calling handlers. ParallelLogger will not capture R messages, errors, and warnings, only explicit calls to ParallelLogger. (This message will not be sh
...[truncated]...
rReport(dbms, err$message, sqlStatement, errorReportFile)`: Error executing SQL:
table main.cdm_source has 12 columns but 10 values were supplied
An error report has been created at /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DataQualityDashboard.Rcheck/tests/testthat/errorReportSql.txt
Backtrace:
▆
1. └─DatabaseConnector::renderTranslateExecuteSql(...) at test-executeDqChecks.R:657:3
2. └─DatabaseConnector::executeSql(...)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─DatabaseConnector:::.createErrorReport(dbms, err$message, sqlStatement, errorReportFile)
8. └─rlang::abort(...)
[ FAIL 6 | WARN 0 | SKIP 6 | PASS 93 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted- ERROR12 OK, 1 ERRORNow
- ERROR11 OK, 2 ERROR2026-10-09
- OK13 OK2026-08-22
- ERROR12 OK, 1 ERROR2026-08-20
- OK13 OK2026-08-05
- NOTE12 OK, 1 NOTE2026-08-01
Show 11 earlier changesHide 11 earlier changes
- OK13 OK2026-06-09
- ERROR12 OK, 1 ERROR2026-06-08
- OK13 OK2026-05-24
- ERROR12 OK, 1 ERROR2026-05-17
- OK13 OK2026-05-15
- ERROR12 OK, 1 ERROR2026-05-13
- OK13 OK2026-05-09
- ERROR11 OK, 1 ERROR2026-04-26
- OK14 OK2026-04-06
- ERROR13 OK, 1 ERROR2026-04-04
- OK14 OK2026-03-10
Documentation
- Help pages
- 23 (15 internal)
- Examples that run
- no examples
- Exported functions with examples
- 0%
- Documented parameters
- 96%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Downloads
Repository
- PRs merged (all time)
- 80%
- Median days to close, 50 most recently updated closed issues
- 74
- Median days to close, 50 most recently updated closed PRs
- 0
Stars over time
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9 development-tooling and community-health practices detected across 6 families in the upstream repository
Checks run against github.com/ohdsi/dataqualitydashboard on 2026-10-18.
The R CMD check workflow runs on Linux, macOS and Windows
Show all practicesHide 2 practices
This repository shows signs of AI coding tools.
- Cursorfirst seen 2025-11-04Named in .Rbuildignore: .cursorNamed in .gitignore: .cursor
- Claude Codefirst seen 2026-05-17Seen in the repository: CLAUDE.mdNamed in .Rbuildignore: CLAUDE.mdPull request it wrote: opened by a project memberCommits: at least 3 crediting it in the message
- Claude Opus 52 commits · Oct 2026
- Claude Opus 5.51 commit · Oct 2026
Dependencies
Installing DataQualityDashboard adds 49 packages (28 with compiled code, 28 MB of source tarballs). Heaviest: stringi 11 MB, Rcpp 1.8 MB, jsonlite 1.0 MB.
Code & Tests
People & History
Package metadata
- First published
- 2026-01-28
- Total releases
- 5 / 1 yrs
- License
- Apache License 2.0 OSI
- Minimum R
- ≥ 3.2.2
- Download size
- 1.2 MB
Cite
Cite this package
Run in R for the authors' entry:
citation("DataQualityDashboard")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/jamia/ocab132.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.