R Observatory: Metrics for DataFusionGDM version 1.3.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DataFusionGDM

1.3.2Package record

Machine Learning for Integrating Partially Overlapped Genetic Datasets

0packages depend

2.1Kdownloads / year

42.0%test coverage

13/13flavors OK

Overview

About

Maintained by Jiashuai ZhuCRAN page ↗GitHub ↗Issues ↗

Tools to simulate genetic distance matrices, align and compare them via multidimensional scaling (MDS) and Procrustes, and evaluate imputation with the Bootstrapping Evaluation for Structural Missingness Imputation (BESMI) framework. Methods align with Zhu et al. (2025) doi:10.3389/fpls.2025.1543956 and the associated software resource Zhu (2025) doi:10.26188/28602953.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DataFusionGDM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jiashuaiz/DataFusion-GDM")

Development version from jiashuaiz/DataFusion-GDM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-datafusiongdm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DataFusionGDM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DataFusionGDM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-02

Show 2 earlier changesHide 2 earlier changes

ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.2

READMEYes · 149 wordsVignettesYes · 3 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 20 (4 internal)
Examples that run: 100%1 run in a plain check
Exported functions with examples: 7%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (3)

How these are measured

Downloads

2.1K

CRAN downloads in the past year

Rank #22,198 · ~6/day · ~176/mo

Releases R versions

Daily download trend is not available in this view yet.

25030 days

59090 days

2.1K1 year

Compare downloads with other packages →

Also on71 r2u10 autocran

How downloads are counted

Repository

jiashuaiz/datafusion-gdm ↗Account: jiashuaiz

0Stars

0Forks

0Open issues

0Open PRs

0Releases

dataset-integrationgenetic-distancepartially-overlapped-datasets

License file reads as GPL-3.0 · Last activity 2026-08-02

Responsiveness

not measured

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/jiashuaiz/datafusion-gdm on 2026-10-11.

Research and citation (1)

CITATION.cff

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing DataFusionGDM adds 64 packages (35 with compiled code, 52 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, lme4 4.1 MB.

Depends (1)

R >= 3.6

Imports (5)

ggplot2 vegan micestatsutils

LinkingTo (0)

none

Suggests (4)

VIM knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Jiashuai Zhu

Author, Maintainer since 1.3.2 (2025)

Faculty of Science, The University of Melbourne, Parkville, VIC, Australia; Agriculture Victoria, AgriBio Centre…

Agriculture Victoria

Copyright holder

The University of Melbourne

Copyright holder

Releases (1)

R
R 4.6.0 released · 2026-04-24
1.3.2Latest
record
2025-11-04 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-11-04
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.6
Download size: 46 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("DataFusionGDM")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.3389/fpls.2025.1543956, 10.26188/28602953.

The repository also keeps a CITATION.cff.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DataFusionGDM version 1.3.2 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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