R Observatory: Metrics for DTSEA version 0.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DTSEA

0.0.3

Drug Target Set Enrichment Analysis

0packages depend

2.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Junwei HanFirst published 2022-10-123 releasesCRAN page ↗

It is a novel tool used to identify the candidate drugs against a particular disease based on the drug target set enrichment analysis. It assumes the most effective drugs are those with a closer affinity in the protein-protein interaction network to the specified disease. (See Gómez-Carballa et al. (2022) <doi: 10.1016/j.envres.2022.112890> and Feng et al. (2022) <doi: 10.7150/ijms.67815> for disease expression profiles; see Wishart et al. (2018) <doi: 10.1093/nar/gkx1037> and Gaulton et al. (2017) <doi: 10.1093/nar/gkw1074> for drug target information; see Kanehisa et al. (2021) <doi: 10.1093/nar/gkaa970> for the details of KEGG database.)

Install

R (CRAN)Ubuntu (r2u)

install.packages("DTSEA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dtsea

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 2.9 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 356 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 29%

Downloads

2.8K

CRAN downloads in the past year

Rank #13,394 · ~8/day · ~231/mo

Releases R versions

Daily download trend is not available in this view yet.

20830 days

75790 days

2.8K1 year

Compare downloads with other packages →

Also on96 r2u

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (8)

dplyr fgsea igraph magrittr tibble tidyr BiocParallel stringr

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Junwei Han

Author, Maintainer, Copyright holder

Authors (2)

Junwei Han

Author, Maintainer, Copyright holder

Yinchun Su

Author

Copyright holders (1)

Junwei Han

Author, Maintainer, Copyright holder

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.0.3Latest
2022-11-06 · current release · diff ↗
0.0.2
2022-10-18 · diff ↗
0.0.1
2022-10-12
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-10-12
Total releases: 3 / 4 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.0.0
Bundled data: 147 KB / 4 files
Download size: 295 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("DTSEA")

Format

Han, J., & Su, Y. (2022). DTSEA: Drug Target Set Enrichment Analysis (Version 0.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.DTSEA

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DTSEA version 0.0.3 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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