R Observatory: Metrics for DEMEtics version 0.8-7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2020-01-14. Its history is shown below.

Reason: check errors were not corrected in time. Detritus with variable names

Details below reflect version 0.8-7, its last release before removal.

DEMEtics

0.8-7Package record

Evaluating the genetic differentiation between populations based on Gst and D values.

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Alexander JueterbockCRAN page ↗

This package allows to calculate the fixation index Gst (Nei, 1973) and the differentiation index D (Jost, 2008) pairwise between or averaged over several populations. P-values, stating the significance of differentiation, and 95 percent confidence intervals can be estimated using bootstrap resamplings. In the case that more than two populations are compared pairwise, the p-values are adjusted by bonferroni correction and in several other ways due to the multiple comparison from one data set.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/DEMEtics/DEMEtics_0.8-7.tar.gz"
pkgFile <- "DEMEtics_0.8-7.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.8-7) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.8-7

READMENoVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 4includes a package overview page
Examples that run: 100%3 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 25%

How these are measured

Downloads

DEMEtics Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.8.0

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Contributor

Contributor

Contributor

Contributor

Maintainer since 0.8.0 (2010)

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-01-14
check errors were not corrected in time Detritus with variable names
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
0.8-7
record
2013-12-02 · diff ↗ ·
added 1 export
DEMEtics.env
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
0.8-5
record
2012-02-26 · diff ↗
R
R 2.14.0 released · 2011-10-31
0.8-4
record
2011-10-24 · diff ↗
R
R 2.13.0 released · 2011-04-13
0.8-3
record
2011-03-05 · diff ↗

Show 6 earlier eventsHide 6 earlier events

0.8-2
record
2011-01-08 · diff ↗ ·
removed 34 exports
all.pops.D, all.pops.Dest, all.pops.Dest.Chao, all.pops.Gst, all.pops.Gst.est, pair.pops.D, pair.pops.Dest, pair.pops.Dest.Chao, pair.pops.Gst, pair.pops.Gst.est, allelefreq, Bootstrapping.Dest, Bootstrapping.D, Bootstrapping.Chao, Bootstrapping.Gst, Bootstrapping.Gst.est, Hj, Hs, Ht, H.out, D, D.calc, Dest, Dest.calc, Gst.est, Gst.est.calc, Gst, Gst.calc, Dest.Chao, Dest.Chao.calc and 4 more

added 2 exports
D.Jost, Gst.Nei
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
0.8.1
record
2010-02-11 · diff ↗
0.8.0
record
2010-02-11
R
R 2.10.0 released · 2009-10-26

Package metadata

First published: 2010-02-11
Total releases: 7 / 16 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.8.0
Bundled data: 0.7 KB / 2 files

Cite

Cite this package

Run in R for the authors' entry:

citation("DEMEtics")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DEMEtics version 0.8-7 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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