R Observatory: Metrics for DDHFm version 1.1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DDHFm

1.1.4Package record

Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)

0packages depend

3.2Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Guy NasonCRAN page ↗

Contains the normalizing and variance stabilizing Data-Driven Haar-Fisz algorithm. Also contains related algorithms for simulating from certain microarray gene intensity models and evaluation of certain transformations. Contains cDNA and shipping credit flow data.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DDHFm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ddhfm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DDHFm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DDHFm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.4 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.4

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 18
Examples that run: 80%4 run in a plain check · 1 never run
Exported functions with examples: 31%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 50%

Vignettes (1)

An R package for variance stabilization (for microarrays) PDF

How these are measured

Downloads

3.2K

CRAN downloads in the past year

Rank #12,708 · ~9/day · ~267/mo

Releases R versions

Daily download trend is not available in this view yet.

31830 days

89290 days

3.2K1 year

Compare downloads with other packages →

Also on414 r2u13 autocran

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Installing DDHFm adds 3 packages (2 with compiled code, 794 KB of source tarballs). Heaviest: wavethresh 567 KB, sfsmisc 187 KB, lokern 40 KB.

Depends (1)

R >= 2.10

Imports (2)

lokern wavethresh

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Guy Nason

Author, Maintainer since 1.1 (2013) · added in 1.1

Piotr Fryzlewicz

Author

Efthimios Motakis

Author · added in 1.1

Previously maintained by Efthimios S. Motakis (1.0 to 1.0-3.1).

Listed in earlier versions (2)

Efthimios S. Motakis

no longer listed · 1.0 to 1.0-3.1

Guy P. Nason

no longer listed · 1.0 to 1.0-3.1

Releases (10)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
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R 4.5.0 released · 2025-04-11
1.1.4Latest
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2024-10-04 · current release · diff ↗
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R 4.4.0 released · 2024-04-24
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R 4.3.0 released · 2023-04-21
1.1.3
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2022-11-26 · diff ↗
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R 4.2.0 released · 2022-04-22
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R 4.1.0 released · 2021-05-18
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R 4.0.0 released · 2020-04-24
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R 3.6.0 released · 2019-04-26
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R 3.5.0 released · 2018-04-23
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R 3.4.0 released · 2017-04-21
1.1.2
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2016-10-25 · diff ↗
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R 3.3.0 released · 2016-05-03
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R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10

Show 22 earlier eventsHide 22 earlier events

1.1.1
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2013-10-31 · diff ↗
1.1
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2013-10-22 · diff ↗ ·
removed 1 export
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added 1 export
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R 3.0.0 released · 2013-04-03
1.0-3.1
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2012-10-29 · diff ↗ ·
added 1 export
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R 2.15.0 released · 2012-03-30
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R 2.14.0 released · 2011-10-31
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R 2.13.0 released · 2011-04-13
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R 2.12.0 released · 2010-10-15
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R 2.11.0 released · 2010-04-22
1.0-3
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2009-11-27 · diff ↗
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R 2.10.0 released · 2009-10-26
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R 2.9.0 released · 2009-04-17
1.0-2.1
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2009-02-23 · diff ↗
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R 2.8.0 released · 2008-10-20
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R 2.7.0 released · 2008-04-22
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R 2.6.0 released · 2007-10-03
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R 2.5.0 released · 2007-04-24
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R 2.4.0 released · 2006-10-03
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R 2.3.0 released · 2006-04-24
1.0-2
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2006-02-08 · diff ↗
1.0
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2005-10-19
R
R 2.2.0 released · 2005-10-06

Package metadata

First published: 2005-10-19
Total releases: 10 / 21 yrs
License: GPL-2 OSI
Minimum R: ≥ 2.10
Bundled data: 259 KB / 3 files
Download size: 3.8 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("DDHFm")

Format

Nason, G., Fryzlewicz, P., & Motakis, E. (2024). DDHFm: Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) (Version 1.1.4) [Computer software]. https://doi.org/10.32614/CRAN.package.DDHFm

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DDHFm version 1.1.4 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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