CytoSimplex
Simplex Visualization of Cell Fate Similarity in Single-Cell Data
Description
Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.
Downloads
584
Last 30 days
6237th
1.7K
Last 90 days
6.9K
Last year
Trend: +3.6% (30d vs prior 30d)
32
Last 30 days
135
Last 90 days
432
Last year
Trend: -22% (30d vs prior 30d)
4
Last 7 days
22
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Package required but not available: ‘plotly’ Package suggested but not available for checking: ‘Seurat’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.1Mb
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.1Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/CytoSimplex.Rcheck/00install.out' for details.
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.1Mb
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.1Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.1Mb
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.1Mb
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
117 10 exported
Complexity
3.7 avg / 22 max
Call network
117 nodes / 125 edges
Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,850
Files
58
Compiled share
8.6%
Has compiled src
Yes
Language breakdown
API
Exported functions
10
Internal functions
69
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.11
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
53.3%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2023-12-13
Latest release
2025-04-23
Avg cadence
249 days
Cold removal rate
–
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.