R Observatory: Metrics for CoreMicrobiomeR version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CoreMicrobiomeR

0.1.0

Identification of Core Microbiome

0packages depend

2.5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Mohammad Samir FarooqiFirst published 2024-04-031 releasesCRAN page ↗

The Core Microbiome refers to the group of microorganisms that are consistently present in a particular environment, habitat, or host species. These microorganisms play a crucial role in the functioning and stability of that ecosystem. Identifying these microorganisms can contribute to the emerging field of personalized medicine. The 'CoreMicrobiomeR' is designed to facilitate the identification, statistical testing, and visualization of this group of microorganisms.This package offers three key functions to analyze and visualize microbial community data. This package has been developed based on the research papers published by Pereira et al.(2018) doi:10.1186/s12864-018-4637-6 and Beule L, Karlovsky P. (2020) doi:10.7717/peerj.9593.

Install

R (CRAN)Ubuntu (r2u)

install.packages("CoreMicrobiomeR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-coremicrobiomer

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 1.4 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 13%

Downloads

2.5K

CRAN downloads in the past year

Rank #12,359 · ~7/day · ~207/mo

Releases R versions

Daily download trend is not available in this view yet.

34530 days

80790 days

2.5K1 year

Compare downloads with other packages →

Also on108 r2u

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (9)

fastmatch vegan SRS edgeR ggplot2 ggrepelstatsplotly reshape2

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (10)

Maintainer (1)

Mohammad Samir Farooqi

Author, Maintainer

Authors (9)

Mohammad Samir Farooqi

Author, Maintainer

Anu Sharma

Author

Dwijesh Chandra Mishra

Author

Girish Kumar Jha

Author

Krishna Kumar Chaturvedi

Author

Author

Author

Author

Author

Contributors (1)

Kabilan S

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-04-03
Total releases: 1 / 2 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 140 KB / 3 files
Download size: 250 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CoreMicrobiomeR")

Format

Mohammad Samir Farooqi, Anu Sharma, Dwijesh Chandra Mishra, Girish Kumar Jha, Krishna Kumar Chaturvedi, Prawin Arya, Sharanbasappa, Sudhir Srivastava, A M, S., & S, K. (2024). CoreMicrobiomeR: Identification of Core Microbiome (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.CoreMicrobiomeR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CoreMicrobiomeR version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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