R Observatory: Metrics for CoreMicrobiomeR version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CoreMicrobiomeR

0.1.0Package record

Identification of Core Microbiome

0packages depend

2.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Mohammad Samir FarooqiCRAN page ↗

The Core Microbiome refers to the group of microorganisms that are consistently present in a particular environment, habitat, or host species. These microorganisms play a crucial role in the functioning and stability of that ecosystem. Identifying these microorganisms can contribute to the emerging field of personalized medicine. The 'CoreMicrobiomeR' is designed to facilitate the identification, statistical testing, and visualization of this group of microorganisms.This package offers three key functions to analyze and visualize microbial community data. This package has been developed based on the research papers published by Pereira et al.(2018) doi:10.1186/s12864-018-4637-6 and Beule L, Karlovsky P. (2020) doi:10.7717/peerj.9593.

Install

R (CRAN)Ubuntu (r2u)

install.packages("CoreMicrobiomeR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-coremicrobiomer

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 8
Examples that run: 100%5 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 13%

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #16,677 · ~7/day · ~225/mo

Releases R versions

Daily download trend is not available in this view yet.

26530 days

75590 days

2.7K1 year

Compare downloads with other packages →

Also on79 r2u

How downloads are counted

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing CoreMicrobiomeR adds 79 packages (43 with compiled code, 74 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 2.10

Imports (9)

fastmatch vegan SRS edgeR ggplot2 ggrepelstatsplotly reshape2

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (10)

Mohammad Samir Farooqi

Author, Maintainer since 0.1.0 (2024)

Anu Sharma

Author

Dwijesh Chandra Mishra

Author

Girish Kumar Jha

Author

Krishna Kumar Chaturvedi

Author

Author

Author

Author

Author

Contributor

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.1.0Latest
record
2024-04-03 · current release
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-04-03
Total releases: 1 / 2 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 140 KB / 3 files
Download size: 250 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CoreMicrobiomeR")

Format

Mohammad Samir Farooqi, Anu Sharma, Dwijesh Chandra Mishra, Girish Kumar Jha, Krishna Kumar Chaturvedi, Prawin Arya, Sharanbasappa, Sudhir Srivastava, A M, S., & S, K. (2024). CoreMicrobiomeR: Identification of Core Microbiome (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.CoreMicrobiomeR

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CoreMicrobiomeR version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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