R Observatory: Metrics for ConsensusOPLS version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ConsensusOPLS

1.1.0

Consensus OPLS for Multi-Block Data Fusion

1packages depend

2.4Kdownloads / year

77.0%test coverage

13/13checks pass

Overview

About

Maintained by Van Du T. TranFirst published 2024-06-202 releasesCRAN page ↗

Merging data from multiple sources is a relevant approach for comprehensively evaluating complex systems. However, the inherent problems encountered when analyzing single tables are amplified with the generation of multi-block datasets, and finding the relationships between data layers of increasing complexity constitutes a challenging task. For that purpose, a generic methodology is proposed by combining the strength of established data analysis strategies, i.e. multi-block approaches and the Orthogonal Partial Least Squares (OPLS) framework to provide an efficient tool for the fusion of data obtained from multiple sources. The package enables quick and efficient implementation of the consensus OPLS model for any horizontal multi-block data structures (observation-based matching). Moreover, it offers an interesting range of metrics and graphics to help to determine the optimal number of components and check the validity of the model through permutation tests. Interpretation tools include score and loading plots, Variable Importance in Projection (VIP), functionality predict for SHAP computing, and performance coefficients such as R2, Q2, and DQ2 coefficients. J. Boccard and D.N. Rutledge (2013) doi:10.1016/j.aca.2013.01.022.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ConsensusOPLS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-consensusopls

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ConsensusOPLS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ConsensusOPLS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 9.9 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.10

77.0%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 98%
Return-value docs: 89%
References docs: 8%

Downloads

2.4K

CRAN downloads in the past year

Rank #15,550 · ~7/day · ~204/mo

Releases R versions

Daily download trend is not available in this view yet.

19830 days

69090 days

2.4K1 year

Compare downloads with other packages →

Also on207 r2u28 autocran

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (6)

R >= 4.0.0statsutilsgraphicsgrDevicesmethods

Imports (2)

parallelreshape2

LinkingTo (0)

none

Suggests (8)

testthat knitr ggplot2 ggrepel plotly psych DT ComplexHeatmap

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

R.ComDim

Code & Tests

Datasets

People & History

People (6)

Maintainer (1)

Van Du T. Tran

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Funders (2)

Mark Ibberson

Funder

Marie Tremblay-Franco

Funder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.0Latest
2025-02-27 · current release · diff ↗
1.0.0
2024-06-20
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-06-20
Total releases: 2 / 2 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.0.0
Bundled data: 32 KB / 1 file
Download size: 3.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ConsensusOPLS")

Format

Tran, V. D. T., Boccard, J., Bougel, C., Ibberson, M., Mehl, F., & Tremblay-Franco, M. (2025). ConsensusOPLS: Consensus OPLS for Multi-Block Data Fusion (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.ConsensusOPLS

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ConsensusOPLS version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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