R Observatory: Metrics for CaPO4Sim version 0.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CaPO4Sim

0.2.1Package record

A Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis

0packages depend

3.3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by David GranjonCRAN page ↗Declared funders: Kidney NCCR.CH, University of Lausanne and 1 more

Explore calcium (Ca) and phosphate (Pi) homeostasis with two novel 'Shiny' apps, building upon on a previously published mathematical model written in C, to ensure efficient computations. The underlying model is accessible here https://pubmed.ncbi.nlm.nih.gov/28747359/). The first application explores the fundamentals of Ca-Pi homeostasis, while the second provides interactive case studies for in-depth exploration of the topic, thereby seeking to foster student engagement and an integrative understanding of Ca-Pi regulation.

Changes in 0.2.1

Fix CRAN notes.
Removed shinyapps.io links.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CaPO4Sim", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-capo4sim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CaPO4Sim

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CaPO4Sim

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25

Show 1 earlier changeHide 1 earlier change

NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.1

READMEYes · 187 wordsVignettesNoNEWSYes · 100% structured · mentions 0.2.1Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 38 (1 internal)includes a package overview page
Examples that run: 100%1 run in a plain check (under a condition)
Exported functions with examples: 3%
Documented parameters: 100%
Return-value docs: 0%
Help pages citing references: 0%

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #13,433 · ~9/day · ~273/mo

Releases R versions

Daily download trend is not available in this view yet.

29330 days

85290 days

3.3K1 year

Compare downloads with other packages →

Also on198 r2u15 autocran

How downloads are counted

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing CaPO4Sim adds 76 packages (38 with compiled code, 79 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (0)

none

Imports (12)

shiny shinyjs shinyWidgets shinyjqui plotly rintrojs shinycssloaders visNetwork purrr DT magrittrutils

LinkingTo (0)

none

Suggests (3)

htmltools shinydashboard shinydashboardPlus

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (10)

David Granjon

Author, Maintainer since 0.1.0 (2019), Copyright holder

Olivier Bonny

Copyright holder

Vartan Kurtcuoglu

Copyright holder

RinteRface

Copyright holder

R/HTML Templates

The Interface Group

Copyright holder

Hosting Group

François Verrey

Copyright holder

Diane de Zélicourt

Copyright holder

Kidney NCCR.CH

Funder

University of Lausanne

Funder

University of Zurich

Funder

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.2.1Latest
record
2024-08-18 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.2.0
record
2021-03-21 · diff ↗ ·
added 3 exports
fullScreen, fullScreenUI, myCarousel
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.1.0
record
2019-04-11
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-04-11
Total releases: 3 / 7 yrs
License: GPL-3 OSI
Download size: 2.6 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CaPO4Sim")

Format

Granjon, D., Bonny, O., Kidney NCCR.CH, , Kurtcuoglu, V., RinteRface, , The Interface Group, , University of Lausanne, , University of Zurich, , Verrey, F., & de Zélicourt, D. (2024). CaPO4Sim: A Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis (Version 0.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.CaPO4Sim

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CaPO4Sim version 0.2.1 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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