R Observatory: Metrics for CaPO4Sim version 0.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CaPO4Sim

0.2.1

A Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis

0packages depend

3.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by David GranjonFirst published 2019-04-113 releasesCRAN page ↗

Explore calcium (Ca) and phosphate (Pi) homeostasis with two novel 'Shiny' apps, building upon on a previously published mathematical model written in C, to ensure efficient computations. The underlying model is accessible here https://pubmed.ncbi.nlm.nih.gov/28747359/). The first application explores the fundamentals of Ca-Pi homeostasis, while the second provides interactive case studies for in-depth exploration of the topic, thereby seeking to foster student engagement and an integrative understanding of Ca-Pi regulation.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CaPO4Sim", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-capo4sim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CaPO4Sim

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CaPO4Sim

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

97%

Documentation · exports

12

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 187 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 0%
References docs: 0%

Downloads

3.1K

CRAN downloads in the past year

Rank #11,233 · ~9/day · ~259/mo

Releases R versions

Daily download trend is not available in this view yet.

21230 days

88690 days

3.1K1 year

Compare downloads with other packages →

Also on195 r2u19 autocran

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (12)

shiny shinyjs shinyWidgets shinyjqui plotly rintrojs shinycssloaders visNetwork purrr DT magrittrutils

LinkingTo (0)

none

Suggests (3)

htmltools shinydashboard shinydashboardPlus

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (10)

Maintainer (1)

David Granjon

Author, Maintainer, Copyright holder

Authors (1)

David Granjon

Author, Maintainer, Copyright holder

Copyright holders (7)

David Granjon

Author, Maintainer, Copyright holder

Copyright holder

Copyright holder

Copyright holder

Copyright holder

Copyright holder

Copyright holder

Funders (3)

Kidney NCCR.CH

Funder

University of Lausanne

Funder

University of Zurich

Funder

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.2.1Latest
2024-08-18 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.2.0
2021-03-21 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.1.0
2019-04-11
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-04-11
Total releases: 3 / 7 yrs
License: GPL-3 OSI
Download size: 2.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CaPO4Sim")

Format

Granjon, D., Bonny, O., Kidney NCCR.CH, , Kurtcuoglu, V., RinteRface, , The Interface Group, , University of Lausanne, , University of Zurich, , Verrey, F., & de Zélicourt, D. (2024). CaPO4Sim: A Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis (Version 0.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.CaPO4Sim

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CaPO4Sim version 0.2.1 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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