R Observatory: Metrics for CNVRG version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CNVRG

1.0.0

Dirichlet Multinomial Modeling of Relative Abundance Data

0packages depend

2.9Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Joshua HarrisonFirst published 2020-09-163 releasesCRAN page ↗

Implements Dirichlet multinomial modeling of relative abundance data using functionality provided by the 'Stan' software. The purpose of this package is to provide a user friendly way to interface with 'Stan' that is suitable for those new to modeling. For more regarding the modeling mathematics and computational techniques we use see our publication in Molecular Ecology Resources titled 'Dirichlet multinomial modeling outperforms alternatives for analysis of ecological count data' (Harrison et al. 2020 doi:10.1111/1755-0998.13128).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CNVRG", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cnvrg

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CNVRG

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CNVRG

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 6.9 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Check history

NOTE2026-07-29
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-27
10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-22
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 213 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 89%
Documented parameters: 100%
Return-value docs: 100%
References docs: 10%

Downloads

2.9K

CRAN downloads in the past year

Rank #12,279 · ~8/day · ~240/mo

Releases R versions

Daily download trend is not available in this view yet.

22530 days

81490 days

2.9K1 year

Compare downloads with other packages →

Also on389 r2u17 autocran

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (6)

methodsRcpp rstan vegan rstantools tibble

LinkingTo (6)

BH Rcpp RcppEigen RcppParallel rstan StanHeaders (>= 2.18.0)

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Joshua Harrison

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.0Latest
2021-09-04 · current release · diff ↗
R
R 4.1.0 released · 2021-05-18
0.2
2020-11-21 · diff ↗
0.1
2020-09-16
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-09-16
Total releases: 3 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.4.0
Bundled data: 1.4 KB / 1 file
Download size: 25 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CNVRG")

Format

Harrison, J., Buerkle, C. A., Calder, W. J., & Shastry, V. (2021). CNVRG: Dirichlet Multinomial Modeling of Relative Abundance Data (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.CNVRG

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CNVRG version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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