R Observatory: Metrics for CLAG version 2.18.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2015-07-01. Its history is shown below.

Reason: maintainer address <raphael.champeimont@upmc.fr> bounced

Details below reflect version 2.18.1, its last release before removal.

CLAG

2.18.1

An unsupervised non hierarchical clustering algorithm handling biological data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Raphael CHAMPEIMONT6 releasesCRAN page ↗

CLAG (for CLusters AGgregation) is an unsupervised non hierarchical clustering algorithm designed to cluster a large variety of biological data and to provide a clustered matrix and numerical values indicating cluster strength. CLAG clusterizes correlation matrices for residues in protein families, gene-expression and miRNA data related to various cancer types, sets of species described by multidimensional vectors of characters, binary matrices. It does not ask to all data points to cluster and it converges yielding the same result at each run. Its simplicity and speed allows it to run on reasonably large datasets.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/CLAG/CLAG_2.18.1.tar.gz"
pkgFile <- "CLAG_2.18.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.18.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

0

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 67%
References docs: 71%

Downloads

CLAG Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

R >= 2.14

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

clue

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Other (3)

Linda DIB

Contributor

Raphael CHAMPEIMONT

Contributor

Alessandra CARBONE

Contributor

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 3.3.0 released · 2016-05-03
archivedRemoved from CRAN
2015-07-01
maintainer address <raphael.champeimont@upmc.fr> bounced
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
2.18.1
2013-09-13 · diff ↗
2.17.1
2013-08-19 · diff ↗
2.16.1
2013-06-06 · diff ↗
2.10
2013-05-02 · diff ↗
2.7
2013-04-30 · diff ↗
2.5
2013-04-12
R
R 3.0.0 released · 2013-04-03

Package metadata

Total releases: 6
License: BSD_2_clause + file LICENSE | GPL (>= 2) OSI
Minimum R: ≥ 2.14
Bundled data: 178 KB / 4 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CLAG")

Format

DIB, L., CHAMPEIMONT, R., & CARBONE, A. (n.d.). CLAG: An unsupervised non hierarchical clustering algorithm handling biological data (Version 2.18.1) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=CLAG

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CLAG version 2.18.1 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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