R Observatory: Metrics for CIARA version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CIARA

0.1.0Package record

Cluster Independent Algorithm for Rare Cell Types Identification

0packages dependsuggested by 1

3.3Kdownloads / year

–test coverage

10/13flavors OK

Overview

About

Maintained by Gabriele LubattiCRAN page ↗

Identification of markers of rare cell types by looking at genes whose expression is confined in small regions of the expression space https://github.com/ScialdoneLab.

Install

R (CRAN)Ubuntu (r2u)

install.packages("CIARA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ciara

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

3NOTE10OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.

NOTEre-building of vignette outputsr-oldrel-macos-x86_64

Note: skipping ‘CIARA.Rmd’ due to unavailable dependencies: 'Seurat'

CRAN check page ↗

Slowest check: 2.8 min · r-oldrel-windows-x86_64

Status changes

NOTE10 OK, 3 NOTE2026-06-09
ERROR10 OK, 2 NOTE, 1 ERROR2026-06-08
NOTE8 OK, 6 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMEYes · 397 wordsVignettesYes · 1 · staticNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 18 (1 internal)
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: 100%
Return-value docs: 94%
Help pages citing references: 0%

Vignettes (1)

CIARA HTML

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #12,005 · ~9/day · ~274/mo

Releases R versions

Daily download trend is not available in this view yet.

37130 days

90890 days

3.3K1 year

Compare downloads with other packages →

Also on201 r2u

How downloads are counted

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Installing CIARA adds 47 packages (30 with compiled code, 48 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, igraph 4.8 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 4.0

Imports (4)

Biobase ggplot2 ggraph magrittr

LinkingTo (0)

none

Suggests (8)

circlize clustree ComplexHeatmap plotly Seurat testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

SCOPRO

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (1)

Gabriele Lubatti

Maintainer since 0.1.0 (2022)

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.1.0Latest
record
2022-02-22 · current release
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-22
Total releases: 1 / 4 yrs
License: Artistic-2.0 OSI
Minimum R: ≥ 4.0
Download size: 4.7 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CIARA")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CIARA version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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