R Observatory: Metrics for BoneDensityMapping version 0.1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BoneDensityMapping

0.1.4Package record

Maps Bone Densities from CT Scans to Surface Models

0packages depend

3.1Kdownloads / year

48.7%test coverage

13/13flavors OK

Overview

About

Maintained by Scott TelferCRAN page ↗

Allows local bone density estimates to be derived from CT data and mapped to 3D bone models in a reproducible manner. Processing can be performed at the individual bone or group level. Also includes tools for visualizing the bone density estimates. Example methods are described in Telfer et al., (2021) doi:10.1002/jor.24792, Telfer et al., (2021) doi:10.1016/j.jse.2021.05.011.

Changes in 0.1.4

Tests and vignettes should now fail gracefully

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("BoneDensityMapping", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bonedensitymapping

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BoneDensityMapping

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.7 min · r-release-macos-x86_64

Status changes

OK13 OK2026-09-19
ERROR12 OK, 1 ERROR2026-09-16
OK13 OK2026-08-05
ERROR12 OK, 1 ERROR2026-08-04
NOTE12 OK, 1 NOTE2026-08-01

Show 9 earlier changesHide 9 earlier changes

OK13 OK2026-06-22
ERROR12 OK, 1 ERROR2026-06-20
OK13 OK2026-06-12
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-04-16
ERROR13 OK, 1 ERROR2026-04-15
OK14 OK2026-04-10
ERROR13 OK, 1 ERROR2026-04-09
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.4

READMEYes · 26 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 0.1.4Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 17
Examples that run: 13%2 run in a plain check · 13 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

example-workflow-vignette HTML

How these are measured

Downloads

3.1K

CRAN downloads in the past year

Rank #7,863 · ~8/day · ~255/mo

Releases R versions

Daily download trend is not available in this view yet.

55230 days

1.2K90 days

3.1K1 year

Compare downloads with other packages →

Also on90 r2u

How downloads are counted

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Installing BoneDensityMapping adds 125 packages (70 with compiled code, 139 MB of source tarballs). Heaviest: BH 14 MB, stringi 11 MB, sf 9.3 MB.

Depends (1)

R >= 2.10

Imports (16)

cowplot ggplot2 ggpubrmethodsoro.nifti ptinpoly rdist rjson concaveman geometry sp rgl RNifti Rvcg FNN nat

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown testthat curl

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Scott Telfer

Lucas Lacambra

Author

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.1.4Latest
record
2025-10-08 · current release · diff ↗
0.1.3
record
2025-08-26 · diff ↗
0.1.2
record
2025-07-28 · diff ↗ ·
removed 1 export
reorientate_landmarks
0.1.1
record
2025-07-25
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-07-25
Total releases: 4 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10
Download size: 44 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BoneDensityMapping")

Format

Telfer, S., & Lacambra, L. (2025). BoneDensityMapping: Maps Bone Densities from CT Scans to Surface Models (Version 0.1.4) [Computer software]. https://doi.org/10.32614/CRAN.package.BoneDensityMapping

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BoneDensityMapping version 0.1.4 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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