R Observatory: Metrics for BoneDensityMapping version 0.1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BoneDensityMapping

0.1.4

Maps Bone Densities from CT Scans to Surface Models

0packages depend

2.6Kdownloads / year

48.7%test coverage

13/13checks pass

Overview

About

Maintained by Scott TelferFirst published 2025-07-254 releasesCRAN page ↗

Allows local bone density estimates to be derived from CT data and mapped to 3D bone models in a reproducible manner. Processing can be performed at the individual bone or group level. Also includes tools for visualizing the bone density estimates. Example methods are described in Telfer et al., (2021) doi:10.1002/jor.24792, Telfer et al., (2021) doi:10.1016/j.jse.2021.05.011.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("BoneDensityMapping", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bonedensitymapping

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BoneDensityMapping

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 5.7 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.41

48.7%

Coverage · measured lines

100%

Documentation · exports

16

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-08-04
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-22
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-20
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 7 earlier snapshots

OK2026-06-12
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-16
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-15
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 26 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 13%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.6K

CRAN downloads in the past year

Rank #15,437 · ~7/day · ~213/mo

Releases R versions

Daily download trend is not available in this view yet.

17330 days

68090 days

2.6K1 year

Compare downloads with other packages →

Also on122 r2u

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (16)

cowplot ggplot2 ggpubrmethodsoro.nifti ptinpoly rdist rjson concaveman geometry sp rgl RNifti Rvcg FNN nat

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown testthat curl

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Scott Telfer

Author, Maintainer, Copyright holder

Authors (2)

Scott Telfer

Author, Maintainer, Copyright holder

Lucas Lacambra

Author

Copyright holders (1)

Scott Telfer

Author, Maintainer, Copyright holder

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.4Latest
2025-10-08 · current release · diff ↗
0.1.3
2025-08-26 · diff ↗
0.1.2
2025-07-28 · diff ↗
0.1.1
2025-07-25
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-07-25
Total releases: 4 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10
Download size: 44 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BoneDensityMapping")

Format

Telfer, S., & Lacambra, L. (2025). BoneDensityMapping: Maps Bone Densities from CT Scans to Surface Models (Version 0.1.4) [Computer software]. https://doi.org/10.32614/CRAN.package.BoneDensityMapping

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BoneDensityMapping version 0.1.4 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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