R Observatory: Metrics for BioTooltipR version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BioTooltipR

0.1.1

Add Bio Tooltips to HTML Reports

0packages depend

417downloads / year

77.2%test coverage

13/13checks pass

Overview

About

Maintained by Matthew J. MeierFirst published 2026-06-302 releasesCRAN page ↗GitHub ↗

Provides lightweight helpers for adding gene and chemical tooltips to 'R Markdown', 'Quarto', 'shiny', 'pkgdown', and other HTML outputs. The package emits small HTML spans with module-specific data attributes and attaches the browser-side 'bio-tooltips' JavaScript and CSS assets through 'htmltools'. Entity lookup and rendering are handled in the browser by 'bio-tooltips'; this package does not query biological databases from R during package checks.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BioTooltipR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mattjmeier/BioTooltipR")

Development version from mattjmeier/BioTooltipR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-biotooltipr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BioTooltipR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BioTooltipR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.8 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.22

77.2%

Coverage · measured lines

100%

Documentation · exports

4

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-01
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 186 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 96%
Return-value docs: 100%
References docs: 0%

Downloads

417

CRAN downloads in the past year

Rank #23,482 · ~1/day · ~35/mo

Releases R versions

Daily download trend is not available in this view yet.

17030 days

41790 days

4171 year

Compare downloads with other packages →

Also on15 r2u12 autocran

Repository

GitHub ↗ mattjmeier/biotooltipr

1Stars

0Forks

0Open issues

0Open PRs

1Releases

bioinformaticschemicalsgenesrrmarkdowntooltiptooltip-librarytooltips

Last activity 2026-08-20

Stars over time

2026-07-07 · 02026-08-18 · 1

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/mattjmeier/biotooltipr on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Automation and maintenance (1)

Dependabot

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (4)

htmltools jsonlite knitrutils

LinkingTo (0)

none

Suggests (5)

DT htmlwidgets plotly rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Matthew J. Meier

Author, Maintainer

Authors (1)

Matthew J. Meier

Author, Maintainer

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

0.1.1Latest
2026-08-20 · current release · diff ↗
0.1.0
2026-06-30
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-30
Total releases: 2 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1
Download size: 1.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BioTooltipR")

Format

Meier, M. J. (2026). BioTooltipR: Add Bio Tooltips to HTML Reports (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.BioTooltipR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BioTooltipR version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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