R Observatory: Metrics for BayesSenMC version 0.1.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BayesSenMC

0.1.5

Different Models of Posterior Distributions of Adjusted Odds Ratio

0packages depend

3.4Kdownloads / year

–test coverage

9/13checks pass

Overview

About

Maintained by Jinhui YangFirst published 2019-04-086 releasesCRAN page ↗GitHub ↗

Generates different posterior distributions of adjusted odds ratio under different priors of sensitivity and specificity, and plots the models for comparison. It also provides estimations for the specifications of the models using diagnostics of exposure status with a non-linear mixed effects model. It implements the methods that are first proposed in doi:10.1016/j.annepidem.2006.04.001 and doi:10.1177/0272989X09353452.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BayesSenMC", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("formidify/BayesSenMC")

Development version from formidify/BayesSenMC. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayessenmc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BayesSenMC

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BayesSenMC

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

4NOTE9OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 20.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

8

Dependencies · direct

Check history

NOTE2026-07-29
9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-27
8 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-07-16
9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-07
9 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-22
7 OK · 7 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-18
6 OK · 7 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
7 OK · 7 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 18%

Downloads

3.4K

CRAN downloads in the past year

Rank #10,929 · ~9/day · ~284/mo

Releases R versions

Daily download trend is not available in this view yet.

27130 days

89590 days

3.4K1 year

Compare downloads with other packages →

Also on415 r2u39 autocran

Repository

GitHub ↗ formidify/bayessenmc

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2021-08-23

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/formidify/bayessenmc on 2026-08-16.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (8)

methodsRcpp RcppParallel rstan (>= 2.18.1)rstantools dplyr ggplot2 lme4

LinkingTo (6)

BH Rcpp RcppEigen RcppParallel rstan StanHeaders (>= 2.18.0)

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (3)

Jinhui Yang

no longer listed · 0.1.0 to 0.1.5

Haitao Chu

no longer listed · 0.1.1 to 0.1.5

and Lifeng Lin

no longer listed · 0.1.1 to 0.1.5

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.5Latest
2022-08-06 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.4
2021-10-06 · diff ↗
unarchivedReturned to CRAN
2021-10-06
archivedRemoved from CRAN
2021-09-20
check problems were not corrected in time
0.1.3
2021-09-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.1.2
2020-05-26 · diff ↗
unarchivedReturned to CRAN
2020-05-26
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-03-19
maintainer's email address does not exist when asked for corrections
R
R 3.6.0 released · 2019-04-26

Show 3 earlier events

0.1.1
2019-04-15 · diff ↗
0.1.0
2019-04-08
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-04-08
Total releases: 6 / 7 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.4.0
Bundled data: 1.3 KB / 1 file
Download size: 39 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BayesSenMC")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BayesSenMC version 0.1.5 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →