R Observatory: Metrics for BayesSIM version 2.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BayesSIM

2.0.0Package record

Integrated Interface of Bayesian Single Index Models using 'nimble'

0packages depend

5.6Kdownloads / year

27.0%test coverage

13/13flavors OK

Overview

About

Maintained by Seowoo JungCRAN page ↗GitHub ↗Issues ↗

Provides tools for fitting Bayesian single index models with flexible choices of priors for both the index and the link function. The package implements model estimation and posterior inference using efficient MCMC algorithms built on the 'nimble' framework, allowing users to specify, extend, and simulate models in a unified and reproducible manner. The following methods are implemented in the package: Antoniadis et al. (2004) https://www.jstor.org/stable/24307224, Wang (2009) doi:10.1016/j.csda.2008.12.010, Choi et al. (2011) doi:10.1080/10485251003768019, Dhara et al. (2019) doi:10.1214/19-BA1170, McGee et al. (2023) doi:10.1111/biom.13569.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BayesSIM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Seowoo-Jung/BayesSIM")

Development version from Seowoo-Jung/BayesSIM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayessim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BayesSIM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BayesSIM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 15.8 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.0

READMEYes · 116 wordsVignettesNoNEWSYes · 67% structured · does not mention 2.0.0Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 33 (1 internal)includes a package overview page
Examples that run: 13%4 run in a plain check · 27 only when donttest examples are enabled (R CMD check --as-cran) · 1 never run
Exported functions with examples: 100%
Documented parameters: 91%
Return-value docs: 100%
Help pages citing references: 30%

How these are measured

Downloads

5.6K

CRAN downloads in the past year

Rank #7,187 · ~15/day · ~467/mo

Releases R versions

Daily download trend is not available in this view yet.

49430 days

1.2K90 days

5.6K1 year

Compare downloads with other packages →

Also on652 r2u28 autocran

How downloads are counted

Repository

seowoo-jung/bayessim ↗Account: Seowoo-Jung

0Stars

0Forks

0Open issues

0Open PRs

1Releases

6Commits

1Commit identities

License file reads as GPL-2.0 · 6 commits · Last activity 2026-05-27 · The default branch showed an older version (1.0.4) than CRAN on 2026-10-21

Responsiveness

not measured

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/seowoo-jung/bayessim on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing BayesSIM adds 44 packages (22 with compiled code, 45 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, igraph 4.8 MB.

Depends (2)

R >= 4.1nimble

Imports (11)

posterior magrittrMASSmethodsmvtnorm patchwork tidyr ggplot2 dplyr loo coda

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Seowoo Jung

Author, Maintainer since 0.1.4 (2025)

Eun-kyung Lee

Author

Releases (9)

Pick two releases to compare their code metrics.

2.0.0Latest
record
2026-10-14 · current release · diff ↗ ·
added 3 exports
getCModel, getCSampler, getWAIC
1.0.4
record
2026-05-14 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.3
record
2026-04-07 · diff ↗
1.0.2
record
2026-03-20 · diff ↗ ·
removed 2 exports
get_model, get_sampler

added 2 exports
getModel, getSampler
1.0.1
record
2026-01-08 · diff ↗
1.0.0
record
2025-12-18 · diff ↗
0.2.1
record
2025-12-15 · diff ↗ ·
removed 13 exports
Xlinear, alphaTheta, dKnotsSimple, dunitSphere, dvMFnim, expcov_gpPolar, expcov_gpSphere, expcov_gpSpike, rKnotsSimple, runitSphere, rvMFnim, transX_fisher, transX_sp

added 20 exports
BayesSIM_setup, GOF, as_bsim, bsFisher_setup, bsPolar_setup, bsSphere_setup, bsSpike_setup, getInit, getModelDef, getVarMonitor, get_model, get_sampler, gpFisher_setup, gpPolarHigh_setup, gpPolar_setup, gpSphere_setup, gpSpike_setup, init_param, nimTraceplot, prior_param
0.1.5
record
2025-11-13 · diff ↗
0.1.4
record
2025-10-30
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-10-30
Total releases: 9 / 1 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.1
Bundled data: 22 KB / 2 files
Download size: 153 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BayesSIM")

Format

Jung, S., & Lee, E. (2026). BayesSIM: Integrated Interface of Bayesian Single Index Models using 'nimble' (Version 2.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.BayesSIM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BayesSIM version 2.0.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →