R Observatory: Metrics for BayesFBHborrow version 2.0.20

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BayesFBHborrow

2.0.20Package record

Bayesian Dynamic Borrowing with Flexible Baseline Hazard Function

0packages depend

3.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Grant IzmirlianCRAN page ↗

Allows Bayesian borrowing from a historical dataset for time-to- event data. A flexible baseline hazard function is achieved via a piecewise exponential likelihood with time varying split points and smoothing prior on the historic baseline hazards. The method is described in Scott and Lewin (2026) doi:10.1093/biostatistics/kxag006, and a paper focused on the software is in Scott, Axillus, Lewin and Izmirlian (2026) doi:10.48550/arXiv.2408.04327.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BayesFBHborrow", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayesfbhborrow

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BayesFBHborrow

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BayesFBHborrow

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-10-20
WARNING11 OK, 2 WARNING2026-07-18
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.20

READMEYes · 114 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 16 (1 internal)
Examples that run: 54%7 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran) · 5 never run
Exported functions with examples: 83%
Documented parameters: 100%
Return-value docs: 92%
Help pages citing references: 69%

Vignettes (1)

BayesFBHborrow PDF

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #9,732 · ~9/day · ~284/mo

Releases R versions

Daily download trend is not available in this view yet.

43730 days

1K90 days

3.4K1 year

Compare downloads with other packages →

Also on123 r2u20 autocran

How downloads are counted

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Installing BayesFBHborrow adds 120 packages (60 with compiled code, 100 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (1)

R >= 4.1

Imports (18)

rlang dplyr invgamma mvtnorm checkmate magrittr ggplot2 patchwork kableExtrastatssurvivalsurvminer extraDistr bayestestR future future.apply parallelly progressr

LinkingTo (0)

none

Suggests (6)

tibble readxl testthat rmarkdown ggfortify condSURV

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Grant Izmirlian

Author, Maintainer since 2.0.9 (2026) · added in 2.0.9

Sophia Axillus

Author

Darren Scott

Author

Previously maintained by Darren Scott (0.0.2 to 2.0.2).

Releases (10)

Submitted 2.0.21, in pretest since 2026-10-23 19:40 UTC, as of the 2026-10-23 19:40 UTC queue snapshot. See the queue →

Pick two releases to compare their code metrics.

2.0.20Latest
record
2026-10-19 · current release · diff ↗ ·
listed once in CRAN's queue
Seen in one reading of CRAN's incoming queue, at 2026-10-19 18:02 UTC, so it stayed less than the time between readings.
2.0.19
record
2026-10-19 · diff ↗ ·
added 3 exports
trial_data, historical_data, MTE
·
5 hours in CRAN's queue
Listed in CRAN's incoming queue from 2026-10-19 00:39 to 2026-10-19 05:32 UTC, in 2 readings.
2.0.14
record
2026-07-17 · diff ↗
2.0.12
record
2026-07-17 · diff ↗
2.0.10
record
2026-06-25 · diff ↗
2.0.9
record
2026-06-20 · diff ↗ ·
removed 1 export
GibbsMH

added 8 exports
genBFBHBdat, xifinder, read_haz_mcmc_smpls, ci, kable, Combine, Surv, coefficients
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.0.2
record
2024-09-16 · diff ↗
2.0.1
record
2024-06-24 · diff ↗ ·
removed 3 exports
plot_hist, plot_matrix, plot_trace
R
R 4.4.0 released · 2024-04-24
1.0.1
record
2024-02-27 · diff ↗
0.0.2
record
2024-01-11
R
R 4.3.0 released · 2023-04-21

Across CRAN, the median accepted release of the past year spent 23 hours in the queue, 90% under 11 days.How queue time is measured

Package metadata

First published: 2024-01-11
Total releases: 10 / 2 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1
Download size: 9.4 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BayesFBHborrow")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BayesFBHborrow version 2.0.20 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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