R Observatory: Metrics for BaMORC version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2021-04-14. Its history is shown below.

Reason: policy violation. on Internet access

Details below reflect version 1.0.1, its last release before removal.

BaMORC

1.0.1

Bayesian Model Optimized Reference Correction Method for Assigned and Unassigned Protein NMR Spectra

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Xi Chen2 releasesCRAN page ↗GitHub ↗

Provides reference correction for protein NMR spectra. Bayesian Model Optimized Reference Correction (BaMORC) is utilizing Bayesian probabilistic framework to perform protein NMR referencing correction, currently for alpha and beta carbon-13 chemical shifts, without any resonance assignment and/or three-dimensional protein structure. For more detailed explanation, please refer to the paper "Automatic 13C Chemical Shift Reference Correction for Unassigned Protein NMR Spectra" https://rdcu.be/4ly5 (Journal of Biomolecular NMR, Aug 2018)" doi:10.1007/s10858-018-0202-5.

Install

R (source archive)pak (dev)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/BaMORC/BaMORC_1.0.1.tar.gz"
pkgFile <- "BaMORC_1.0.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("MoseleyBioinformaticsLab/BaMORC")

Development version from MoseleyBioinformaticsLab/BaMORC. Installs pak first if it is not already available.

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BaMORC

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

11

Dependencies · direct

Documentation

READMEYes · 280 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 97%
Return-value docs: 100%
References docs: 0%

Downloads

BaMORC Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on17 autocran

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1.0

Imports (11)

data.table tidyr DEoptim httr docopt stringr jsonlite readr devtools RBMRB BMRBr

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown formatR

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Xi Chen

Author, Maintainer

Authors (3)

Xi Chen

Author, Maintainer

Andrey Smelter

Author

Hunter Moseley

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-04-14
policy violation on Internet access
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.0.1
2019-01-02 · diff ↗
1.0
2018-11-14
R
R 3.5.0 released · 2018-04-23

Package metadata

Total releases: 2
License: BSD_3_clause + file LICENSE OSI
Minimum R: ≥ 3.1.0
Bundled data: 2.1 MB / 4 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BaMORC")

Format

Chen, X., Smelter, A., & Moseley, H. (n.d.). BaMORC: Bayesian Model Optimized Reference Correction Method for Assigned and Unassigned Protein NMR Spectra (Version 1.0.1) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=BaMORC

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BaMORC version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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