R Observatory: Metrics for BPM version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BPM

1.0.0

Bayesian Purity Model to Estimate Tumor Purity

0packages depend

2.3Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Jianzhao Gao and Xiaodan FanFirst published 2018-11-031 releasesCRAN page ↗

Bayesian purity model to estimate tumor purity using methylation array data (DNA methylation Infinium 450K array data) without reference samples.

Install

R (CRAN)Ubuntu (r2u)

install.packages("BPM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bpm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.1 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 67%
References docs: 13%

Downloads

2.3K

CRAN downloads in the past year

Rank #20,222 · ~6/day · ~194/mo

Releases R versions

Daily download trend is not available in this view yet.

15830 days

56490 days

2.3K1 year

Compare downloads with other packages →

Also on180 r2u

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (2)

statslimma

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (3)

Xiaodan Fan

no longer listed · 1.0.0

Jianzhao Gao

no longer listed · 1.0.0

Linghao Shen

no longer listed · 1.0.0

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2018-11-03
Total releases: 1 / 8 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 2.3 MB / 4 files
Download size: 2.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BPM")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BPM version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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