R Observatory: Metrics for BOG version 2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-04-27. Its history is shown below.

Reason: check issues were not corrected in time. length > 1 in && or ||

Details below reflect version 2.0, its last release before removal.

BOG

2.0

Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Jincheol Park3 releasesCRAN page ↗

An implementation of three statistical tests for identification of COG (Cluster of Orthologous Groups) that are over represented among genes that show differential expression under conditions. It also provides tabular and graphical summaries of the results for easy visualisation and presentation.

Install

R (source archive)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/BOG/BOG_2.0.tar.gz"
pkgFile <- "BOG_2.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BOG

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

2

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 17%

Downloads

BOG Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on30 autocran

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.1.2hash DIME

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (5)

Other (5)

Jincheol Park (Keimyung University

Contributor · added in 2.0

South Korea)

Contributor · added in 2.0

Cenny Taslim

Contributor

Shili Lin (The Ohio State University

Contributor · added in 2.0

USA)

Contributor · added in 2.0

Listed in earlier versions (3)

Shili Lin

no longer listed · 1.0 to 1.1

Jincheol Park

no longer listed · 1.0 to 1.1

The Ohio State University

no longer listed · 1.0 to 1.1

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-04-27
check issues were not corrected in time length > 1 in && or ||
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
2.0
2015-02-23 · diff ↗
archivedRemoved from CRAN
2014-08-18
maintainer address <park.1750@mbi.osu.edu> bounced
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
1.1
2013-03-19 · diff ↗
1.0
2013-03-05

Show 1 earlier events

R
R 2.15.0 released · 2012-03-30

Package metadata

Total releases: 3
License: GPL-3 OSI
Minimum R: ≥ 3.1.2
Bundled data: 108 KB / 7 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BOG")

Format

University, J. P. (., Korea), S., Taslim, C., University, S. L. (. O. S., & USA), . (n.d.). BOG: Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions (Version 2.0) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=BOG

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BOG version 2.0 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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