R Observatory: Metrics for BMTME version 1.0.19

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2023-06-05. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 1.0.19, its last release before removal.

BMTME

1.0.19Package record

Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Francisco Javier Luna-VazquezCRAN page ↗GitHub ↗

Genomic selection and prediction models with the capacity to use multiple traits and environments, through ready-to-use Bayesian models. It consists a group of functions that help to create regression models for some genomic models proposed by Montesinos-López, et al. (2016) doi:10.1534/g3.116.032359 also in Montesinos-López et al. (2018) doi:10.1534/g3.118.200728 and Montesinos-López et al. (2018) doi:10.2134/agronj2018.06.0362.

Changes in 1.0.19

Changes:

[FIX] Rcpp bug to run test

From NEWS.md in the release

Install

R (source archive)pak (dev)

url <- "https://cran.r-project.org/src/contrib/Archive/BMTME/BMTME_1.0.19.tar.gz"
pkgFile <- "BMTME_1.0.19.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.19) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("frahik/BMTME")

Development version from frahik/BMTME. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.19

READMENoVignettesNoNEWSYes · 33% structured · mentions 1.0.19Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 46 (1 internal)includes a package overview page
Examples that run: 0%6 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 75%
Documented parameters: 85%
Return-value docs: 38%
Help pages citing references: 39%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on281 r2u52 autocran75 c2d4u

How downloads are counted

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (10)

BGLR doSNOW dplyr foreach matrixcalc mvtnorm progress snow tidyr Rcpp

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (2)

covr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

Francisco Javier Luna-Vazquez

Author, Maintainer since 1.0.4 (2019)

Fernando H. Toledo

Author

Osval Antonio Montesinos-Lopez

Author

Abelardo Montesinos-Lopez

Author

Jose Crossa

Author

Releases (9)

Pick two releases to compare their code metrics.

R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2023-06-05
issues were not corrected in time
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.19
record
2020-08-26 · diff ↗
unarchivedReturned to CRAN
2020-05-27
1.0.15
record
2020-05-26 · diff ↗
archivedRemoved from CRAN
2020-04-24
check problems were not corrected in time Checking tests excluded on most platforms as do not complete
R
R 4.0.0 released · 2020-04-24
1.0.12
record
2019-10-17 · diff ↗
1.0.11
record
2019-10-01 · diff ↗
unarchivedReturned to CRAN
2019-09-26
1.0.10
record
2019-09-26 · diff ↗
unarchivedReturned to CRAN
2019-09-24
Re-archived 2019-09-24 as check problems were still present
1.0.9
record
2019-09-24 · diff ↗

Show 6 earlier eventsHide 6 earlier events

archivedRemoved from CRAN
2019-09-16
check problems were not corrected in time
R
R 3.6.0 released · 2019-04-26
1.0.6
record
2019-02-12 · diff ↗
1.0.5
record
2019-02-02 · diff ↗
1.0.4
record
2019-01-11
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-01-11
Total releases: 9 / 7 yrs
License: LGPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 52 KB / 6 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BMTME")

Format

Luna-Vazquez, F. J., Toledo, F. H., Montesinos-Lopez, O. A., Montesinos-Lopez, A., & Crossa, J. (n.d.). BMTME: Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis (Version 1.0.19) [Computer software]. Retrieved October 26, 2026, from https://CRAN.R-project.org/package=BMTME

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BMTME version 1.0.19 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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