This package was removed from CRAN on 2020-03-07. Its history is shown below.

Reason: check problems were not corrected in time

Details below reflect version 2.0-0, its last release before removal.

BEQI2

2.0-0

Benthic Ecosystem Quality Index 2

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Dennis Walvoort3 releasesCRAN page ↗

Tool for analysing benthos data. It estimates several quality indices like the total abundance of species, species richness, Margalef's d, AZTI Marine Biotic Index (AMBI), and the BEQI-2 index. Furthermore, additional (optional) features are provided that enhance data preprocessing: (1) genus to species conversion, i.e.,taxa counts at the taxonomic genus level can optionally be converted to the species level and (2) pooling: small samples are combined to bigger samples with a standardized size to (a) meet the data requirements of the AMBI, (b) generate comparable species richness values and (c) give a higher benthos signal to noise ratio.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/BEQI2/BEQI2_2.0-0.tar.gz"
pkgFile <- "BEQI2_2.0-0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.0-0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 4.03

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 75%
Documented parameters: 98%
Return-value docs: 50%
References docs: 18%

Downloads

BEQI2 Releases R versions

Daily download trend is not available in this view yet.

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Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.0.2methods

Imports (6)

knitr markdown jsonlite xtable plyr reshape2

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Dennis Walvoort

Author, Maintainer

Authors (2)

Dennis Walvoort

Author, Maintainer

Willem van Loon

Author, Copyright holder

Willem van Loon

Author, Copyright holder

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-03-07
check problems were not corrected in time
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
2.0-0
2015-01-06 · diff ↗
1.0-1
2014-06-10 · diff ↗
1.0-0
2014-04-16
R
R 3.1.0 released · 2014-04-10

Package metadata

Total releases: 3
License: GPL (>= 3) OSI
Minimum R: ≥ 3.0.2
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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