R Observatory: Metrics for BEDASSLE version 1.6.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BEDASSLE

1.6.1Package record

Quantifies Effects of Geo/Eco Distance on Genetic Differentiation

0packages depend

4Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Gideon BradburdCRAN page ↗

Provides functions that allow users to quantify the relative contributions of geographic and ecological distances to empirical patterns of genetic differentiation on a landscape. Specifically, we use a custom Markov chain Monte Carlo (MCMC) algorithm, which is used to estimate the parameters of the inference model, as well as functions for performing MCMC diagnosis and assessing model adequacy.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BEDASSLE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bedassle

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BEDASSLE

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BEDASSLE

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Gideon Bradburd <bradburd@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gideon",
                    family = "Bradburd",
                    role = c("aut", "cre"),
                    email = "bradburd@umich.edu")
as necessary.

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.6.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 25includes a package overview page
Examples that run: 71%5 run in a plain check · 2 hold no code
Exported functions with examples: 23%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 24%

How these are measured

Downloads

4K

CRAN downloads in the past year

Rank #8,947 · ~11/day · ~333/mo

Releases R versions

Daily download trend is not available in this view yet.

40730 days

1.1K90 days

4K1 year

Compare downloads with other packages →

Also on141 r2u30 autocran163 conda_forge

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Installing BEDASSLE adds 9 packages (4 with compiled code, 4.0 MB of source tarballs). Heaviest: Rcpp 1.8 MB, mvtnorm 1.0 MB, bbmle 529 KB.

Depends (0)

none

Imports (3)

MASSmatrixcalc emdbook

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (1)

Gideon Bradburd

Maintainer since 1.0 (2013)

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.6.1Latest
record
2024-01-12 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.6
record
2022-04-10 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
1.5
record
2014-12-04 · diff ↗
1.4
record
2014-06-10 · diff ↗

Show 6 earlier eventsHide 6 earlier events

R
R 3.1.0 released · 2014-04-10
1.3
record
2014-01-25 · diff ↗
1.2
record
2013-10-01 · diff ↗
1.1
record
2013-09-11 · diff ↗
1.0
record
2013-07-31
R
R 3.0.0 released · 2013-04-03

Package metadata

First published: 2013-07-31
Total releases: 8 / 13 yrs
License: GPL (>= 2) OSI
Bundled data: 60 KB / 2 files
Download size: 89 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BEDASSLE")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BEDASSLE version 1.6.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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