R Observatory: Metrics for BADER version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2012-12-23. Its history is shown below.

Reason: the request of the maintainer

Details below reflect version 0.1.1, its last release before removal.

BADER

0.1.1

Bayesian Analysis of Differential Expression in RNA Sequencing Data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Andreas Neudecker2 releasesCRAN page ↗

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Install

BioconductorR (source archive)

BiocManager::install("BADER")

Installs the current Bioconductor release. Requires the BiocManager package.

url <- "https://cran.r-project.org/src/contrib/Archive/BADER/BADER_0.1.1.tar.gz"
pkgFile <- "BADER_0.1.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

0

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

BADER Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on3K bioconda

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Other (2)

Andreas Neudecker

Contributor

Matthias Katzfuss

Contributor · added in 0.1.1

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 3.0.0 released · 2013-04-03
archivedRemoved from CRAN
2012-12-23
the request of the maintainer
0.1.1
2012-11-21 · diff ↗
0.1
2012-11-15
R
R 2.15.0 released · 2012-03-30

Package metadata

Total releases: 2
License: GPL-2 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BADER")

Format

Neudecker, A., & Katzfuss, M. (n.d.). BADER: Bayesian Analysis of Differential Expression in RNA Sequencing Data (Version 0.1.1) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=BADER

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BADER version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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