R Observatory: Metrics for AntibodyTiters version 0.1.24

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

AntibodyTiters

0.1.24Package record

Antibody Titer Analysis of Vaccinated Patients

0packages depend

3.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Hiroaki KatoCRAN page ↗

Visualization of antibody titer scores is valuable for examination of vaccination effects. 'AntibodyTiters' visualizes antibody titers of all or selected patients. This package also produces empty excel files in a specified format, in which users can fill in experimental data for visualization. Excel files with toy data can also be produced, so that users can see how it is visualized before obtaining real data. The data should contain titer scores at pre-vaccination, after-1st shot, after-2nd shot, and at least one additional sampling points. Patients with missing values can be included. The first two sampling points (pre-vaccination and after-1st shot) will be plotted discretely, whereas those following will be plotted on a continuous time scale that starts from the day of second shot. Half-life of titer can also be calculated for each pair of sampling points.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("AntibodyTiters", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-antibodytiters

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-AntibodyTiters

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-AntibodyTiters

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.24

READMENoVignettesNoNEWSYes · 67% structured · does not mention 0.1.24Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 9includes a package overview page
Examples that run: 63%5 run in a plain check · 3 hold no code
Exported functions with examples: 100%
Documented parameters: 81%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

3.5K

CRAN downloads in the past year

Rank #11,299 · ~10/day · ~295/mo

Releases R versions

Daily download trend is not available in this view yet.

35830 days

92190 days

3.5K1 year

Compare downloads with other packages →

Also on78 r2u23 autocran

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Installing AntibodyTiters adds 52 packages (35 with compiled code, 39 MB of source tarballs). Heaviest: stringi 11 MB, data.table 5.7 MB, DescTools 2.6 MB.

Depends (3)

R >= 3.3.0openxlsx DescTools

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Hiroaki Kato

Author, Maintainer since 0.1.4 (2021)

Yuuki Mizumoto

Author

Takeshi Urano

Contributor

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.24Latest
record
2022-05-24 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.18
record
2021-10-28 · diff ↗ ·
added 2 exports
groupAttribABT, halfLifeABT
0.1.4
record
2021-09-30
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-30
Total releases: 3 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.3.0
Download size: 97 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AntibodyTiters")

Format

Kato, H., Mizumoto, Y., & Urano, T. (2022). AntibodyTiters: Antibody Titer Analysis of Vaccinated Patients (Version 0.1.24) [Computer software]. https://doi.org/10.32614/CRAN.package.AntibodyTiters

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AntibodyTiters version 0.1.24 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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