R Observatory: Metrics for AnimalHabitatNetwork version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2025-11-27. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 0.1.0, its last release before removal.

AnimalHabitatNetwork

0.1.0

Networks Characterising the Physical Configurations of Animal Habitats

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Peng He1 releasesCRAN page ↗

Functions for generating and visualising networks for characterising the physical attributes and spatial organisations of habitat components (i.e. habitat physical configurations). The network generating algorithm first determines the X and Y coordinates of N nodes within a rectangle with a side length of L and an area of A. Then it computes the pair-wise Euclidean distance Dij between node i and j, and then a complete network with 1/Dij as link weights is constructed. Then, the algorithm removes links from the complete network with the probability as shown in the function ahn_prob(). Such link removals can make the network disconnected whereas a connected network is wanted. In such cases, the algorithm rewires one network component to its spatially nearest neighbouring component and repeat doing this until the network is connected again. Finally, it outputs an undirected network (weighted or unweighted, connected or disconnected). This package came with a manuscript on modelling the physical configurations of animal habitats using networks (in preparation).

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/AnimalHabitatNetwork/AnimalHabitatNetwork_0.1.0.tar.gz"
pkgFile <- "AnimalHabitatNetwork_0.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-animalhabitatnetwork

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-AnimalHabitatNetwork

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

3

Dependencies · direct

Documentation

READMEYes · 209 wordsVignettesNopkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 81%
Return-value docs: 100%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on105 r2u12 autocran

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (3)

statsigraph ggplot2

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Peng He

Author, Maintainer

Authors (1)

Peng He

Author, Maintainer

Other (1)

Damien R. Farine

Thesis advisor

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-11-27
issues were not corrected despite reminders
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.1.0
2019-11-25
R
R 3.6.0 released · 2019-04-26

Package metadata

Total releases: 1
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AnimalHabitatNetwork")

Format

He, P., & Farine, D. R. (n.d.). AnimalHabitatNetwork: Networks Characterising the Physical Configurations of Animal Habitats (Version 0.1.0) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=AnimalHabitatNetwork

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AnimalHabitatNetwork version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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