R Observatory: Metrics for AlphaPart version 0.9.8

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

AlphaPart

0.9.8

Partition/Decomposition of Breeding Values by Paths of Information

0packages depend

5.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Gregor GorjancFirst published 2019-06-1814 releasesCRAN page ↗

A software that implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes. The partitioning method is described in Garcia-Cortes et al. (2008) doi:10.1017/S175173110800205X. The package includes the main function AlphaPart for partitioning breeding values and auxiliary functions for manipulating data and summarizing, visualizing, and saving results.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("AlphaPart", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-alphapart

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-AlphaPart

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-AlphaPart

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.1 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 92%
Documented parameters: 83%
Return-value docs: 54%
References docs: 5%

Downloads

5.1K

CRAN downloads in the past year

Rank #6,463 · ~14/day · ~428/mo

Releases R versions

Daily download trend is not available in this view yet.

43430 days

1.3K90 days

5.1K1 year

Compare downloads with other packages →

Also on510 r2u72 autocran

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (9)

directlabels ggplot2 pedigree (>= 1.3.1)Rcppmethodsreshape dplyr magrittr tibble

LinkingTo (1)

Rcpp

Suggests (7)

RColorBrewer truncnorm knitr rmarkdown testthat covr ggridges

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Gregor Gorjanc

Author, Maintainer

Authors (3)

Gregor Gorjanc

Author, Maintainer

Jana Obsteter

Author

Thiago de Paula Oliveira

Author · added in 0.8.2

Package Timeline

14 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.9.8Latest
2022-11-15 · current release · diff ↗
0.9.7
2022-09-23 · diff ↗
0.9.5
2022-07-07 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.9.3
2022-03-10 · diff ↗
0.9.2
2022-03-09 · diff ↗
0.9.1
2022-02-14 · diff ↗
0.9.0
2022-01-10 · diff ↗
0.8.4
2021-10-22 · diff ↗
0.8.3
2021-09-28 · diff ↗
0.8.2
2021-09-21 · diff ↗
R
R 4.1.0 released · 2021-05-18

Show 6 earlier events

R
R 4.0.0 released · 2020-04-24
0.8.1
2020-03-25 · diff ↗
0.8.0
2020-03-17 · diff ↗
0.7.0
2019-06-27 · diff ↗
0.6.0
2019-06-18
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-06-18
Total releases: 14 / 7 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 0.4 KB / 1 file
Download size: 1.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AlphaPart")

Format

Gorjanc, G., Obsteter, J., & de Paula Oliveira, T. (2022). AlphaPart: Partition/Decomposition of Breeding Values by Paths of Information (Version 0.9.8) [Computer software]. https://doi.org/10.32614/CRAN.package.AlphaPart

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AlphaPart version 0.9.8 [Data set]. HJJB, LLC. Data release v2026-08-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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