R Observatory: Metrics for AdmixPoly version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

AdmixPoly

1.0.1

Global and Local Admixture Inference in Polyploids

0packages depend

947downloads / year

86.9%test coverage

13/13checks pass

Overview

About

Maintained by Simon RioFirst published 2026-06-092 releasesCRAN page ↗

Provides functions to perform global (genome-wide) and local admixture inference from bi- and multi-allelic marker dosages (discrete or continuous) in polyploid species.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("AdmixPoly", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-admixpoly

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-AdmixPoly

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-AdmixPoly

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.1 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.53

86.9%

Coverage · measured lines

100%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 653 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

947

CRAN downloads in the past year

Rank #10,125 · ~3/day · ~79/mo

Releases R versions

Daily download trend is not available in this view yet.

27030 days

94790 days

9471 year

Compare downloads with other packages →

Also on62 r2u34 autocran

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.6.0

Imports (10)

Rcpp purrrutilsdplyr tidyr tibble ggplot2 magrittrMatrixdata.table

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Simon Rio

Author, Maintainer

Authors (3)

Simon Rio

Author, Maintainer

Franck Gauthier

Author

Tristan Mary-Huard

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

1.0.1Latest
2026-06-18 · current release · diff ↗
1.0.0
2026-06-09
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-09
Total releases: 2 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.6.0
Download size: 121 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AdmixPoly")

Format

Rio, S., Gauthier, F., & Mary-Huard, T. (2026). AdmixPoly: Global and Local Admixture Inference in Polyploids (Version 1.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.AdmixPoly

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AdmixPoly version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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