'AV1' Video Encoding for Biological Microscopy Data
Overview
Converts microscopy video and image data (H.264/H.265, AVI/MJPEG, TIFF stacks) to the 'AV1' codec for compact storage, and archives 16-bit image stacks and videos losslessly in the 'FFV1' format. Encoding runs on the GPU via 'Vulkan' or 'VAAPI' when available and falls back to the CPU through 'FFmpeg' and 'SVT-AV1'. Whole experiment folders can be converted at once.
- Added missing
#include <string>in C++ sources (fixes compilation with clang 23 / libc++). - Added missing
#include <cstddef>in C++ headers usingsize_t.
From NEWS.md in the release
Install
Health
- OK13 OKNow
- OK11 OK2026-10-15
- ERROR8 OK, 1 ERROR2026-10-12
- OK13 OK2026-08-05
- NOTE12 OK, 1 NOTE2026-08-01
- OK13 OK2026-03-10
Documentation
- Help pages
- 12includes a package overview page
- Examples that run
- 70%7 run in a plain check · 3 never run
- Exported functions with examples
- 91%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Downloads
Repository
- PRs merged (all time)
- 100%
- Median days to close, 50 most recently updated closed issues
- 2
- Median days to close, 50 most recently updated closed PRs
- 2
Forks over time
Issues over time
PRs over time
5 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/zabis13/av1r on 2026-10-18.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
Dependencies
Installing AV1R adds no packages beyond those that come with R.
Code & Tests
People & History
Pick two releases to compare their code metrics.
- 0.1.4.1Latest2026-10-14 · current release · diff ↗ ·
listed once in CRAN's queue
Seen in one reading of CRAN's incoming queue, at 2026-10-14 15:39 UTC, so it stayed less than the time between readings. - unarchivedReturned to CRAN2026-10-12
- 0.1.42026-10-12 · diff ↗ ··
added 2 exports
archive_tiff, archive_video30 hours in CRAN's queue
Listed in CRAN's incoming queue from 2026-10-10 20:25 to 2026-10-12 01:57 UTC, in 7 readings. - archivedRemoved from CRAN2026-10-05email to the maintainer is undeliverable And now has an LLVM 23 failure
- RR 4.6.0 released · 2026-04-24
- 0.1.32026-03-23 · diff ↗
- 0.1.22026-03-05
- RR 4.5.0 released · 2025-04-11
Package metadata
- First published
- 2026-03-05
- Total releases
- 4 / 1 yrs
- License
- MIT + file LICENSE OSI
- Minimum R
- ≥ 4.1.0
- Download size
- 137 KB
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("AV1R")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.