R Observatory: Metrics for AIUQ version 0.5.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

AIUQ

0.5.6Package record

Ab Initio Uncertainty Quantification

0packages depend

3.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Mengyang GuCRAN page ↗

Uncertainty quantification and inverse estimation by probabilistic generative models from the beginning of the data analysis. An example is a Fourier basis method for inverse estimation in scattering analysis of microscopy videos. It does not require specifying a certain range of Fourier bases and it substantially reduces computational cost via the generalized Schur algorithm. See the reference: Mengyang Gu, Yue He, Xubo Liu and Yimin Luo (2023), doi:10.48550/arXiv.2309.02468, and Tong Lin, Jinseok Lee, Matt Helgeson, Megan T Valentine, Yimin Luo, Mengyang Gu (2026), doi:10.48550/arXiv.2605.29424.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("AIUQ", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-aiuq

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-AIUQ

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-AIUQ

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 12.7 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-11
ERROR12 OK, 1 ERROR2026-05-26
OK14 OK2026-03-13

Show 2 earlier changesHide 2 earlier changes

ERROR13 OK, 1 ERROR2026-03-12
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.5.6

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 60 (37 internal)includes a package overview page
Examples that run: 92%34 run in a plain check · 3 never run
Exported functions with examples: 67%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 62%

Vignettes (1)

AIUQ tutorial HTML

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #10,053 · ~9/day · ~282/mo

Releases R versions

Daily download trend is not available in this view yet.

37830 days

1K90 days

3.4K1 year

Compare downloads with other packages →

Also on141 r2u19 autocran

How downloads are counted

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing AIUQ adds 16 packages (9 with compiled code, 10 MB of source tarballs). Heaviest: nloptr 2.1 MB, Rcpp 1.8 MB, plot3D 1.8 MB.

Depends (0)

none

Imports (6)

fftwtools SuperGaussmethodsplot3D RobustGaSP geometry

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (4)

Mengyang Gu

Author, Maintainer since 0.5.0 (2023)

Yue He

Author

Tong Lin

Author · added in 0.5.4

Xubo Liu

Author

Releases (7)

Pick two releases to compare their code metrics.

0.5.6Latest
record
2026-10-20 · current release · diff ↗ ·
added 3 exports
calculate_ISF, plot_ISF, plot_moduli
0.5.5
record
2026-06-10 · diff ↗
0.5.4
record
2026-05-25 · diff ↗ ·
added 1 export
Get_Gp_Gpp_GSER
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.5.3
record
2024-07-02 · diff ↗
0.5.2
record
2024-05-04 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.5.1
record
2024-02-12 · diff ↗ ·
removed 1 export
get_Dqt

added 19 exports
SAM_Dqt, aniso_SAM, aniso_simulation, anisotropic_bm_particle_intensity, anisotropic_fbm_ou_particle_intensity, anisotropic_fbm_particle_intensity, anisotropic_log_lik, anisotropic_log_lik_grad, anisotropic_numerical_msd, anisotropic_ou_particle_intensity, get_dqt, get_est_parameters_MSD_SAM_interval_anisotropic, get_isf, get_true_param_aniso_sim, modeled_dqt, modeled_isf, param_uncertainty_anisotropic, show.aniso_sam, show.aniso_simulation
0.5.0
record
2023-11-14
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-11-14
Total releases: 7 / 3 yrs
License: GPL (>= 3) OSI
Download size: 473 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AIUQ")

Format

Gu, M., He, Y., Lin, T., & Liu, X. (2026). AIUQ: Ab Initio Uncertainty Quantification (Version 0.5.6) [Computer software]. https://doi.org/10.32614/CRAN.package.AIUQ

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AIUQ version 0.5.6 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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