R Observatory: Metrics for ADaCGH version 1.5-3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2010-04-05. Its history is shown below.

Details below reflect version 1.5-3, its last release before removal.

ADaCGH

1.5-3

Analysis of data from aCGH experiments

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Ramon Diaz-Uriarte8 releasesCRAN page ↗

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), , ACE method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's modification of Smith & Waterman's algorith. Most computations are parallelized. Figures are imagemaps with links to IDClight (http://idclight.bioinfo.cnio.es).

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/ADaCGH/ADaCGH_1.5-3.tar.gz"
pkgFile <- "ADaCGH_1.5-3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.5-3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

10

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 57%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

ADaCGH Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (11)

R >= 2.2.1cgh tilingArray aCGH cghMCR papply GDD waveslimclustersnapCGH Hmisc

Imports (0)

none

LinkingTo (0)

none

Suggests (4)

Rmpi GLAD DNAcopy rsprng

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Other (3)

Ramon Diaz-Uriarte

Contributor

Oscar M. Rueda. Wavelet-based aCGH smoothing code from Li Hsu <lih@fhcrc.org>

Contributor

Douglas Grove. Imagemap code from Barry Rowlingson <B.Rowlingson@lancaster.ac.uk>. HaarSeg code from Erez Ben-Yaacov; downloaded from <http://www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm>

Contributor · added in 1.3-13

Listed in earlier versions (1)

Douglas Grove. Imagemap code from Barry Rowlingson <B.Rowlingson@lancaster.ac.uk>

no longer listed · 1.3 to 1.3-10

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 2.11.0 released · 2010-04-22
1.5-3archived
2010-04-05 · diff ↗
1.5-3
2009-11-30 · diff ↗
R
R 2.10.0 released · 2009-10-26
1.3-13
2009-05-26 · diff ↗
R
R 2.9.0 released · 2009-04-17
1.3-10
2009-01-09 · diff ↗
1.3-9
2008-10-27 · diff ↗
R
R 2.8.0 released · 2008-10-20
1.3-7
2008-04-30 · diff ↗
R
R 2.7.0 released · 2008-04-22
1.3-4
2007-10-04 · diff ↗
R
R 2.6.0 released · 2007-10-03
1.3-1
2007-05-14 · diff ↗
1.3
2007-04-30
R
R 2.5.0 released · 2007-04-24

Package metadata

Total releases: 8
License: GPL (>= 3) OSI
Minimum R: ≥ 2.2.1
Bundled data: 222 KB / 2 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ADaCGH")

Format

Diaz-Uriarte, R., <lih@fhcrc.org>, O. M. R. W. a. s. c. f. L. H., & <http://www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm>, D. G. I. c. f. B. R. <. R. a. u. H. c. f. E. B. d. f. (n.d.). ADaCGH: Analysis of data from aCGH experiments (Version 1.5-3) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=ADaCGH

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ADaCGH version 1.5-3 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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