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mix_demo

Demo Bulk Gene Expression Data

Bundled with xCell2 · exported, loads via data()

Class
matrix
Dimensions
1,000 × 3
Missing
0
Format
rda · bzip2
version 2 · 14 KB
File
data/mix_demo.rda
Fingerprint
f2ff2843
Format documented
Yes
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
3,000
Missing
0
Min.
0
1st Qu.
5.1465
Median
20.067
Mean
161.066
3rd Qu.
77.504
Max.
29135.6
Std. dev
922.216
Distinct
2,901
Skewness
21.89
Kurtosis
600.8
Zeros
11 0.37%
Outliers
425 0 low · 425 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows05.513121.224161.0779.93922885881.44
Columns131.44152.18172.93161.07175.88178.8325.83

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
RowsCD28, S100B, IL2RB, CD3E, KRT72, CTLA4, CD3D, GNLY, IL7R, MAL, CCL5, CD8A, …1,000
ColumnsF0303, F0304, F03053
Columns

This object is 3 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

20 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 3 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-281,000 × 3Unchangedrda · bzip2
version 2 · 14 KB
exact
3.222025-12-111,000 × 3Unchangedrda · bzip2
version 2 · 14 KB
exact
3.212025-10-061,000 × 3–rda · bzip2
version 2 · 14 KB
exact

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