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shoemaker2015

Time course transcriptomic from mouse lung tissues infected with influenza

Bundled with timecoursedata · exported, loads via data()

Class
list
Elements
2
Missing
0
Format
rda · bzip2
version 2 · 24 MB
File
data/shoemaker2015.rda
Fingerprint
9d83e17b
Format documented
Yes
Source
Source not stated
About this object
A list with no shape constraintsRows of cells of visibly different widths, one below the next, with nothing lining them up and nothing in them, and under them a small block with a header band: an element of a list can be another structure. There is no common length, so there is no row count.list

R's general-purpose container. Elements can be any type and any size. R object catalogue

Structure
Distinct
2
Nesting depth
2
Element length
4 – 209
Total length
213
Nested rows
39,753
Nested columns
4
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
meta
list
4
0
nested·209 rows nested
Element length
209 – 209
Total length
836
Nested rows
209
What is inside it
Element
Type
Distinct
Missing
Summary
integer
209
0
0 – 208mean 104
Min.
0
1st Qu.
52
Median
104
Mean
104
3rd Qu.
156
Max.
208
Std. dev
60.4773
Skewness
6.375e-17
Kurtosis
-1.217
Zeros
1
Order
ascending
Group
factor
5
0
C42K42M42VL42VH41
Replicate
integer
3
0
1 – 3mean 2.005
Min.
1
1st Qu.
1
Median
2
Mean
2.0048
3rd Qu.
3
Max.
3
Std. dev
0.8175
Skewness
-0.0087
Kurtosis
-1.511
Timepoint
integer
14
0
0 – 168mean 43.48
Min.
0
1st Qu.
9
Median
30
Mean
43.4785
3rd Qu.
60
Max.
168
Std. dev
47.0818
Skewness
1.452
Kurtosis
1.185
Zeros
15
Outliers
150 low · 15 high
data
list
209
0
numeric·39,544 rows nested
Element class
numeric
Element length
39,544 – 39,544
Total length
8,264,696
Nested rows
39,544
What is inside it
Element
Type
Distinct
Missing
Summary
GSM1557140
numeric
9,306
0
0.1876 – 18.7894mean 7.878
Min.
0.1876
1st Qu.
5.2255
Median
7.6028
Mean
7.8784
3rd Qu.
10.1361
Max.
18.7894
Std. dev
2.9979
Skewness
0.4216
Kurtosis
-0.664
Outliers
190 low · 19 high
GSM1557141
numeric
9,257
0
2.2658 – 18.7894mean 7.879
Min.
2.2658
1st Qu.
5.1943
Median
7.5999
Mean
7.8787
3rd Qu.
10.1286
Max.
18.7894
Std. dev
2.9884
Skewness
0.4253
Kurtosis
-0.6749
Outliers
180 low · 18 high
GSM1557142
numeric
9,775
0
2.2258 – 18.7894mean 7.878
Min.
2.2258
1st Qu.
5.197
Median
7.599
Mean
7.8783
3rd Qu.
10.128
Max.
18.7894
Std. dev
2.9922
Skewness
0.4251
Kurtosis
-0.6698
Outliers
180 low · 18 high
GSM1557143
numeric
8,988
0
2.1137 – 18.7894mean 7.876
Min.
2.1137
1st Qu.
5.217
Median
7.6022
Mean
7.8758
3rd Qu.
10.1325
Max.
18.7894
Std. dev
2.9982
Skewness
0.4169
Kurtosis
-0.6683
Outliers
190 low · 19 high
GSM1557144
numeric
9,227
0
-2.0969 – 18.7894mean 7.877
Min.
-2.0969
1st Qu.
5.216
Median
7.6021
Mean
7.8771
3rd Qu.
10.1324
Max.
18.7894
Std. dev
2.9947
Skewness
0.4171
Kurtosis
-0.6685
Outliers
190 low · 19 high
GSM1557145
numeric
8,767
0
-2.0969 – 18.7894mean 7.873
Min.
-2.0969
1st Qu.
5.2131
Median
7.6009
Mean
7.8731
3rd Qu.
10.129
Max.
18.7894
Std. dev
2.9984
Skewness
0.4136
Kurtosis
-0.6712
Outliers
190 low · 19 high
GSM1557146
numeric
8,872
0
-1.7505 – 18.7894mean 7.878
Min.
-1.7505
1st Qu.
5.2177
Median
7.6011
Mean
7.8778
3rd Qu.
10.1334
Max.
18.7894
Std. dev
2.995
Skewness
0.4186
Kurtosis
-0.6694
Outliers
190 low · 19 high
GSM1557147
numeric
8,735
0
-0.4481 – 18.7894mean 7.876
Min.
-0.4481
1st Qu.
5.2011
Median
7.6021
Mean
7.8764
3rd Qu.
10.134
Max.
18.7894
Std. dev
2.9967
Skewness
0.4178
Kurtosis
-0.6722
Outliers
180 low · 18 high
GSM1557148
numeric
8,888
0
2.3023 – 18.7894mean 7.88
Min.
2.3023
1st Qu.
5.2067
Median
7.6027
Mean
7.8804
3rd Qu.
10.1369
Max.
18.7894
Std. dev
2.9921
Skewness
0.4236
Kurtosis
-0.6724
Outliers
180 low · 18 high
GSM1557149
numeric
9,264
0
-1.4714 – 18.7894mean 7.879
Min.
-1.4714
1st Qu.
5.2218
Median
7.6038
Mean
7.8794
3rd Qu.
10.1358
Max.
18.7894
Std. dev
2.9932
Skewness
0.4202
Kurtosis
-0.6698
Outliers
190 low · 19 high
GSM1557150
numeric
8,146
0
-0.0252 – 18.7894mean 7.878
Min.
-0.0252
1st Qu.
5.2051
Median
7.6016
Mean
7.8784
3rd Qu.
10.1365
Max.
18.7894
Std. dev
2.9918
Skewness
0.4223
Kurtosis
-0.6767
Outliers
180 low · 18 high
GSM1557151
numeric
8,530
0
-0.312 – 18.7894mean 7.88
Min.
-0.312
1st Qu.
5.1909
Median
7.6017
Mean
7.8796
3rd Qu.
10.1315
Max.
18.7894
Std. dev
2.9918
Skewness
0.4254
Kurtosis
-0.6689
Outliers
170 low · 17 high
GSM1557152
numeric
8,646
0
-2.0969 – 18.7894mean 7.88
Min.
-2.0969
1st Qu.
5.2049
Median
7.5985
Mean
7.8802
3rd Qu.
10.1341
Max.
18.7894
Std. dev
2.9922
Skewness
0.425
Kurtosis
-0.6674
Outliers
180 low · 18 high
GSM1557153
numeric
8,660
0
2.1035 – 18.7894mean 7.881
Min.
2.1035
1st Qu.
5.2066
Median
7.6014
Mean
7.8813
3rd Qu.
10.1334
Max.
18.7894
Std. dev
2.9897
Skewness
0.4265
Kurtosis
-0.6696
Outliers
180 low · 18 high
GSM1557154
numeric
8,770
0
2.1137 – 18.7894mean 7.886
Min.
2.1137
1st Qu.
5.2212
Median
7.603
Mean
7.8864
3rd Qu.
10.1366
Max.
18.7894
Std. dev
2.9908
Skewness
0.4311
Kurtosis
-0.6643
Outliers
190 low · 19 high
GSM1557155
numeric
9,178
0
2.068 – 18.7894mean 7.885
Min.
2.068
1st Qu.
5.2103
Median
7.6016
Mean
7.8851
3rd Qu.
10.137
Max.
18.7894
Std. dev
2.9859
Skewness
0.4303
Kurtosis
-0.6738
Outliers
180 low · 18 high
GSM1557156
numeric
9,272
0
-2.0969 – 18.7894mean 7.886
Min.
-2.0969
1st Qu.
5.2104
Median
7.6027
Mean
7.8858
3rd Qu.
10.1374
Max.
18.7894
Std. dev
2.9866
Skewness
0.4306
Kurtosis
-0.6662
Outliers
180 low · 18 high
GSM1557157
numeric
9,384
0
2.1302 – 18.7894mean 7.883
Min.
2.1302
1st Qu.
5.1986
Median
7.5997
Mean
7.8831
3rd Qu.
10.1308
Max.
18.7894
Std. dev
2.9826
Skewness
0.4312
Kurtosis
-0.6765
Outliers
180 low · 18 high
GSM1557158
numeric
8,259
0
2.1814 – 18.7894mean 7.876
Min.
2.1814
1st Qu.
5.2126
Median
7.5963
Mean
7.8759
3rd Qu.
10.1279
Max.
18.7894
Std. dev
2.9907
Skewness
0.4221
Kurtosis
-0.6781
Outliers
190 low · 19 high
GSM1557159
numeric
9,127
0
-2.0969 – 18.7894mean 7.878
Min.
-2.0969
1st Qu.
5.2202
Median
7.5953
Mean
7.8775
3rd Qu.
10.1275
Max.
18.7894
Std. dev
2.9917
Skewness
0.4225
Kurtosis
-0.6685
Outliers
200 low · 20 high
GSM1557160
numeric
9,791
0
-2.0969 – 18.7894mean 7.879
Min.
-2.0969
1st Qu.
5.2046
Median
7.602
Mean
7.8794
3rd Qu.
10.1324
Max.
18.7894
Std. dev
2.9912
Skewness
0.422
Kurtosis
-0.6726
Outliers
180 low · 18 high
GSM1557161
numeric
9,331
0
2.2658 – 18.7894mean 7.883
Min.
2.2658
1st Qu.
5.2013
Median
7.5969
Mean
7.8825
3rd Qu.
10.1305
Max.
18.7894
Std. dev
2.9845
Skewness
0.432
Kurtosis
-0.6706
Outliers
180 low · 18 high
GSM1557162
numeric
9,392
0
2.3467 – 18.7894mean 7.882
Min.
2.3467
1st Qu.
5.2008
Median
7.5979
Mean
7.8818
3rd Qu.
10.1296
Max.
18.7894
Std. dev
2.9854
Skewness
0.4311
Kurtosis
-0.6716
Outliers
180 low · 18 high
GSM1557163
numeric
9,161
0
2.3658 – 18.7894mean 7.881
Min.
2.3658
1st Qu.
5.2177
Median
7.6009
Mean
7.8806
3rd Qu.
10.1279
Max.
18.7894
Std. dev
2.9854
Skewness
0.4296
Kurtosis
-0.6738
Outliers
200 low · 20 high
GSM1557164
numeric
9,541
0
2.257 – 18.7894mean 7.884
Min.
2.257
1st Qu.
5.2108
Median
7.5982
Mean
7.8839
3rd Qu.
10.129
Max.
18.7894
Std. dev
2.9832
Skewness
0.4346
Kurtosis
-0.6697
Outliers
190 low · 19 high
GSM1557165
numeric
9,234
0
0.0851 – 18.7894mean 7.881
Min.
0.0851
1st Qu.
5.1965
Median
7.5996
Mean
7.8813
3rd Qu.
10.1288
Max.
18.7894
Std. dev
2.9849
Skewness
0.4301
Kurtosis
-0.6735
Outliers
180 low · 18 high
GSM1557166
numeric
9,063
0
2.2658 – 18.7894mean 7.88
Min.
2.2658
1st Qu.
5.2019
Median
7.5985
Mean
7.8801
3rd Qu.
10.1266
Max.
18.7894
Std. dev
2.9838
Skewness
0.4272
Kurtosis
-0.6801
Outliers
190 low · 19 high
GSM1557167
numeric
8,474
0
2.2658 – 18.7894mean 7.877
Min.
2.2658
1st Qu.
5.2129
Median
7.6016
Mean
7.8773
3rd Qu.
10.131
Max.
18.7894
Std. dev
2.993
Skewness
0.4206
Kurtosis
-0.6764
Outliers
190 low · 19 high
GSM1557168
numeric
10,268
0
-2.0969 – 18.7894mean 7.878
Min.
-2.0969
1st Qu.
5.2214
Median
7.5998
Mean
7.8777
3rd Qu.
10.1321
Max.
18.7894
Std. dev
2.9884
Skewness
0.4166
Kurtosis
-0.6856
Outliers
190 low · 19 high
GSM1557169
numeric
9,021
0
-2.0969 – 18.7894mean 7.879
Min.
-2.0969
1st Qu.
5.2105
Median
7.6026
Mean
7.8789
3rd Qu.
10.1337
Max.
18.7894
Std. dev
2.9915
Skewness
0.4197
Kurtosis
-0.6753
Outliers
190 low · 19 high
GSM1557170
numeric
7,845
0
-1.2172 – 18.7894mean 7.872
Min.
-1.2172
1st Qu.
5.2169
Median
7.5884
Mean
7.8719
3rd Qu.
10.1276
Max.
18.7894
Std. dev
2.9861
Skewness
0.4164
Kurtosis
-0.6968
Outliers
160 low · 16 high
GSM1557171
numeric
9,518
0
2.2863 – 18.7894mean 7.877
Min.
2.2863
1st Qu.
5.213
Median
7.5895
Mean
7.8774
3rd Qu.
10.1249
Max.
18.7894
Std. dev
2.9864
Skewness
0.4285
Kurtosis
-0.676
Outliers
200 low · 20 high
GSM1557172
numeric
9,625
0
2.2009 – 18.7894mean 7.878
Min.
2.2009
1st Qu.
5.2129
Median
7.5941
Mean
7.8785
3rd Qu.
10.1263
Max.
18.7894
Std. dev
2.9879
Skewness
0.4296
Kurtosis
-0.6707
Outliers
200 low · 20 high
GSM1557173
numeric
9,037
0
2.2068 – 18.7894mean 7.883
Min.
2.2068
1st Qu.
5.2057
Median
7.6018
Mean
7.8825
3rd Qu.
10.1342
Max.
18.7894
Std. dev
2.987
Skewness
0.427
Kurtosis
-0.6731
Outliers
180 low · 18 high
GSM1557174
numeric
9,442
0
-2.0969 – 18.7894mean 7.879
Min.
-2.0969
1st Qu.
5.207
Median
7.6042
Mean
7.879
3rd Qu.
10.136
Max.
18.7894
Std. dev
2.9916
Skewness
0.4199
Kurtosis
-0.6752
Outliers
180 low · 18 high
GSM1557175
numeric
8,645
0
2.0317 – 18.7894mean 7.873
Min.
2.0317
1st Qu.
5.1976
Median
7.6026
Mean
7.873
3rd Qu.
10.1317
Max.
18.7894
Std. dev
2.9991
Skewness
0.4135
Kurtosis
-0.6768
Outliers
180 low · 18 high
GSM1557176
numeric
8,987
0
-2.0969 – 18.7894mean 7.879
Min.
-2.0969
1st Qu.
5.2038
Median
7.6026
Mean
7.8792
3rd Qu.
10.1314
Max.
18.7894
Std. dev
2.9893
Skewness
0.424
Kurtosis
-0.6676
Outliers
180 low · 18 high
GSM1557177
numeric
9,409
0
2.1137 – 18.7894mean 7.882
Min.
2.1137
1st Qu.
5.2157
Median
7.5984
Mean
7.8822
3rd Qu.
10.1286
Max.
18.7894
Std. dev
2.9828
Skewness
0.4299
Kurtosis
-0.6754
Outliers
190 low · 19 high
GSM1557178
numeric
8,955
0
2.2709 – 18.7894mean 7.88
Min.
2.2709
1st Qu.
5.2039
Median
7.5944
Mean
7.8795
3rd Qu.
10.125
Max.
18.7894
Std. dev
2.9794
Skewness
0.429
Kurtosis
-0.685
Outliers
190 low · 19 high
GSM1557179
numeric
9,414
0
-0.4481 – 18.7894mean 7.882
Min.
-0.4481
1st Qu.
5.2129
Median
7.5984
Mean
7.8819
3rd Qu.
10.1288
Max.
18.7894
Std. dev
2.9849
Skewness
0.4298
Kurtosis
-0.6701
Outliers
190 low · 19 high
GSM1557180
numeric
8,129
0
-0.1042 – 18.7894mean 7.869
Min.
-0.1042
1st Qu.
5.2147
Median
7.587
Mean
7.8694
3rd Qu.
10.1244
Max.
18.7894
Std. dev
2.983
Skewness
0.4156
Kurtosis
-0.6993
Outliers
110 low · 11 high
GSM1557181
numeric
9,564
0
-2.0969 – 18.7894mean 7.881
Min.
-2.0969
1st Qu.
5.2158
Median
7.5998
Mean
7.8807
3rd Qu.
10.1266
Max.
18.7894
Std. dev
2.9846
Skewness
0.4283
Kurtosis
-0.6718
Outliers
200 low · 20 high
GSM1557182
numeric
9,300
0
2.3467 – 18.7894mean 7.883
Min.
2.3467
1st Qu.
5.2133
Median
7.6042
Mean
7.8829
3rd Qu.
10.1366
Max.
18.7894
Std. dev
2.987
Skewness
0.4268
Kurtosis
-0.6777
Outliers
180 low · 18 high
GSM1557183
numeric
9,557
0
2.3533 – 18.7894mean 7.885
Min.
2.3533
1st Qu.
5.2202
Median
7.6018
Mean
7.8847
3rd Qu.
10.1374
Max.
18.7894
Std. dev
2.9872
Skewness
0.4294
Kurtosis
-0.6731
Outliers
190 low · 19 high
GSM1557184
numeric
9,074
0
-0.1042 – 18.7894mean 7.88
Min.
-0.1042
1st Qu.
5.2087
Median
7.6028
Mean
7.8798
3rd Qu.
10.1331
Max.
18.7894
Std. dev
2.9881
Skewness
0.4243
Kurtosis
-0.6819
Outliers
180 low · 18 high
GSM1557185
numeric
8,423
0
1.3862 – 18.7894mean 7.878
Min.
1.3862
1st Qu.
5.2197
Median
7.5946
Mean
7.8785
3rd Qu.
10.1275
Max.
18.7894
Std. dev
2.9793
Skewness
0.4232
Kurtosis
-0.6951
Outliers
140 low · 14 high
GSM1557186
numeric
9,336
0
2.3757 – 18.7894mean 7.882
Min.
2.3757
1st Qu.
5.201
Median
7.6026
Mean
7.8824
3rd Qu.
10.1322
Max.
18.7894
Std. dev
2.9859
Skewness
0.4261
Kurtosis
-0.6766
Outliers
180 low · 18 high
GSM1557187
numeric
10,090
0
-1.7505 – 18.7894mean 7.883
Min.
-1.7505
1st Qu.
5.2225
Median
7.6014
Mean
7.8826
3rd Qu.
10.1364
Max.
18.7894
Std. dev
2.9879
Skewness
0.4242
Kurtosis
-0.6736
Outliers
170 low · 17 high
GSM1557188
numeric
8,830
0
-1.2172 – 18.7894mean 7.88
Min.
-1.2172
1st Qu.
5.2222
Median
7.5993
Mean
7.8801
3rd Qu.
10.1278
Max.
18.7894
Std. dev
2.9875
Skewness
0.4224
Kurtosis
-0.6751
Outliers
200 low · 20 high
GSM1557189
numeric
8,369
0
2.2614 – 18.7894mean 7.881
Min.
2.2614
1st Qu.
5.207
Median
7.6014
Mean
7.881
3rd Qu.
10.1361
Max.
18.7894
Std. dev
2.9967
Skewness
0.4247
Kurtosis
-0.6648
Outliers
180 low · 18 high

The nested tables do not share one set of columns, so there is no single schema to show.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-282 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.222025-10-292 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.212025-04-152 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.202024-10-292 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.192024-04-302 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.182023-10-242 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.172023-04-252 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.162022-11-012 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.152022-04-262 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.142021-10-262 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.132021-05-192 elementsUnchangedrda · bzip2
version 2 · 24 MB
exact
3.122020-10-272 elements–rda · bzip2
version 2 · 24 MB
exact

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